├── .gitignore ├── LICENSE ├── README.md ├── code ├── README.md └── pytorch │ ├── README.md │ ├── docs │ └── README.md │ ├── lib │ ├── README.md │ ├── __init__.py │ ├── arch.py │ ├── dataset.py │ ├── dice.py │ ├── model.py │ ├── prediction.py │ ├── preprocess.py │ └── utils.py │ ├── pred.py │ ├── pytorch_conda_environment.yml │ ├── settings │ ├── README.md │ ├── __init__.py │ ├── data_settings.py │ ├── model_settings.py │ └── training_settings.py │ ├── test.py │ └── train.py ├── data ├── README.md ├── metadata │ ├── image_shapes.txt │ ├── labels.txt │ ├── test.lst │ └── training.lst └── scripts │ ├── 1-generate_annotations.py │ ├── 2-get_image_shapes.py │ ├── 3-get_list.py │ ├── 4-create_dataset.py │ └── utils.py ├── dockerfiles └── README.md ├── notebooks ├── README.md └── pytorch │ └── README.md ├── outputs ├── README.md └── pytorch │ └── README.md └── reports ├── README.md └── pytorch └── README.md /.gitignore: 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