├── .gitignore ├── CITATION.cff ├── LICENSE ├── README.md ├── configure.py ├── csmed ├── __init__.py ├── csmed │ ├── __init__.py │ ├── csmed_all.py │ ├── csmed_basic.py │ └── csmed_cochrane.py ├── csmed_cochrane │ ├── __init__.py │ ├── cochrane_web_parser.py │ ├── match_references.py │ ├── prepare_dataset.py │ ├── rm5_parser.py │ └── search_tar_pubmed.py ├── dataloader.py ├── datasets │ ├── __init__.py │ ├── cohen │ │ ├── __init__.py │ │ └── cohen.py │ ├── cs_reviews │ │ ├── __init__.py │ │ └── cs_reviews.py │ ├── csmed_ft │ │ ├── __init__.py │ │ └── csmed_ft.py │ ├── sas2010 │ │ ├── __init__.py │ │ └── sas2010.py │ ├── sigir2017 │ │ ├── __init__.py │ │ └── sigir2017.py │ ├── sr_updates │ │ ├── __init__.py │ │ └── sr_updates.py │ ├── swift │ │ ├── __init__.py │ │ └── swift.py │ ├── tar2017 │ │ ├── __init__.py │ │ └── tar2017.py │ ├── tar2018 │ │ ├── __init__.py │ │ └── tar2018.py │ └── tar2019 │ │ ├── __init__.py │ │ └── tar2019.py ├── loader │ ├── __init__.py │ ├── bigbiohub.py │ └── systematic_review.py └── utils.py ├── data ├── CSMeD │ └── CSMeD-FT.zip └── raw │ ├── ec2s_reviews.json │ └── pcs_reviews.json ├── dev-requirements.txt ├── notebooks └── load-single-dataset.ipynb ├── requirements.txt ├── scripts ├── convert_sigir2017_dataset.py ├── convert_sr_updates_dataset.py ├── convert_tar_dataset.py ├── prepare_ec2s.py ├── prepare_full_texts.py └── prepare_prospective_dataset.py ├── setup.py ├── vis-requirements.txt └── visualisation ├── _🏠_Home.py ├── create_data_card.py ├── ngram.py ├── pages ├── 01_inspect_single_dataset.py ├── 02_show_collection_statistics.py ├── 03_show_all_datasets.py ├── 05_✔️_Dataset_cards.py ├── 06_full_text_stats.py ├── 06_✔️_LivSB-FT.py ├── 07_CSMeD-Cochrane.py └── 08_✔️_Visualise_dataset_UMAP.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/WojciechKusa/systematic-review-datasets/HEAD/.gitignore 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