├── .gitignore ├── MANIFEST.in ├── README.md ├── img └── sample_lusc.png ├── piano ├── __init__.py ├── datasets │ ├── roi_datasets.py │ └── wsi_datasets.py ├── piano.py ├── roi_classification │ └── roi_finetune_tools.py ├── utils │ └── utils.py ├── wsi_classification │ ├── __init__.py │ ├── mil_baselines.py │ └── wsi_finetune_tools.py └── wsi_preprocess │ ├── slide_feat_tools.py │ └── slide_patch_tools.py ├── pyproject.toml ├── scripts ├── roi_classification │ ├── run_roi_infer.py │ └── run_roi_train.py ├── wsi_classification │ ├── run_wsi_infer.py │ └── run_wsi_train.py └── wsi_preprocess │ ├── 1_run_generate_wsi_list.py │ ├── 2_run_generate_patches.py │ ├── 3_run_create_patchdir_list.py │ └── 4_run_create_wsi_features.py ├── transform_configs ├── create_patch_feats_transforms.yaml └── roi_classification_transforms.yaml └── update_tissuenet_json.py /.gitignore: -------------------------------------------------------------------------------- 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