├── .gitignore ├── Qiao ├── graphicx.jpg ├── talk.aux ├── talk.log ├── talk.nav ├── talk.out ├── talk.pdf ├── talk.snm ├── talk.tex └── talk.toc ├── README.md ├── Slide-AUTheme ├── beamerthemeAUTheme.sty ├── figure │ ├── CUMTB.pdf │ ├── JuliaOpt.pdf │ ├── JuliaOpt_Packages.PNG │ ├── JuliaOpt_edit.svg │ ├── JuliaOpt_icon.pdf │ ├── Rlogo.pdf │ ├── Rlogo.svg │ ├── 优化算法选择.PNG │ └── 最优化算法.PNG ├── fonts │ ├── AlegreyaSansSC-Regular.otf │ ├── Inconsolata.otf │ ├── Lato-Lig.ttf │ ├── Montserrat-Bold.ttf │ ├── Montserrat-Regular.ttf │ ├── NotoSans-Bold.ttf │ ├── NotoSans-BoldItalic.ttf │ ├── NotoSans-Italic.ttf │ └── NotoSans-Regular.ttf ├── presentation-0.png ├── presentation-1.png ├── presentation-2.png ├── presentation.Rnw └── presentation.pdf ├── Slide-Berkeley ├── cumtb.pdf ├── demo.pdf ├── thesis-0.png ├── thesis-1.png ├── thesis-2.png ├── thesis-3.png ├── thesis.aux ├── thesis.nav ├── thesis.out ├── thesis.pdf ├── thesis.snm ├── thesis.tex └── thesis.toc ├── Slide-Caltech ├── beamercolorthemeCaltechBeaver.sty ├── beamerthemeCaltech.sty ├── cumtb_beamer_template.pdf ├── cumtb_beamer_template.tex └── figures │ ├── Caltech_LOGO-Orange_RGB.pdf │ └── hollywood_caltech.jpg ├── Slide-DetlevCM ├── FS-img.JPG ├── pics │ ├── Cute Dog.bmp │ ├── Cute Dog.jpg │ ├── FS-img.jpg │ ├── FS-img1.pdf │ ├── FS-img2.pdf │ ├── FS-img3.JPG │ ├── IMG_0087.JPG │ ├── IMG_0195.JPG │ ├── IMG_20150704_141514.jpg │ ├── IMG_20150717_174307.jpg │ ├── LogoTop.pdf │ ├── foo.svg │ └── yt_logo.svg ├── slide_template.pdf └── slide_template.tex ├── Slide-JLTree ├── JLTree_slide.aux ├── JLTree_slide.log ├── JLTree_slide.nav ├── JLTree_slide.out ├── JLTree_slide.pdf ├── JLTree_slide.snm ├── JLTree_slide.synctex.gz ├── JLTree_slide.tex ├── JLTree_slide.toc └── beamercolorthemeowl.pdf ├── Slide-Oxygen ├── beamerthemeOxygen.sty ├── cumtb_logo.pdf ├── example-talk.aux ├── example-talk.log ├── example-talk.nav ├── example-talk.out ├── example-talk.pdf ├── example-talk.snm ├── example-talk.synctex.gz ├── example-talk.tex ├── example-talk.toc ├── figure │ └── cumtb.pdf └── oxygen-header.pdf ├── Slide-Singapore ├── R-GLMM-pkgs.bib ├── Slide.aux ├── Slide.bbl ├── Slide.blg ├── Slide.log ├── Slide.nav ├── Slide.out ├── Slide.pdf ├── Slide.snm ├── Slide.tex ├── Slide.toc └── figure │ ├── demo03.pdf │ ├── haroop.png │ └── logo.pdf ├── Slide-Steine ├── R-GLMM-pkgs.bib ├── Steine.aux ├── Steine.bbl ├── Steine.blg ├── Steine.log ├── Steine.nav ├── Steine.out ├── Steine.pdf ├── Steine.snm ├── Steine.tex ├── Steine.toc ├── beamerthemeBayreuth.sty ├── beamerthemeGYPT.sty ├── beamerthemeMWG.sty ├── beamerthemeUBayreuth.sty ├── beamerthemeUlm.sty ├── demo03.pdf └── zufriedenheit.pdf ├── Slide-TorinoTh ├── R-GLMM-pkgs.bib ├── figures │ ├── demo01.pdf │ ├── demo010.pdf │ ├── demo0100.pdf │ ├── demo011.pdf │ ├── demo0200.pdf │ ├── demo03.pdf │ ├── logo.pdf │ ├── me.jpg │ └── yuanhui.pdf ├── slide.aux ├── slide.bbl ├── slide.blg ├── slide.log ├── slide.nav ├── slide.out ├── slide.pdf ├── slide.snm ├── slide.tex └── slide.toc ├── Slide-fibeamer ├── cumtb_logo.pdf ├── cumtb_logo.svg ├── econ-lualatex.pdf ├── fibeamer_slide.aux ├── fibeamer_slide.log ├── fibeamer_slide.nav ├── fibeamer_slide.out ├── fibeamer_slide.pdf ├── fibeamer_slide.snm ├── fibeamer_slide.synctex.gz ├── fibeamer_slide.tex ├── fibeamer_slide.toc └── sci-lualatex.pdf ├── Slide-medstar ├── README.txt ├── beamercolorthemeMedStarColors.sty ├── example.aux ├── example.log ├── example.nav ├── example.out ├── example.pdf ├── example.snm ├── example.synctex.gz ├── example.tex ├── example.toc ├── medstarbeamer.cls └── medstarlogo.pdf ├── Slide-seahorse ├── Template.aux ├── Template.log ├── Template.nav ├── Template.out ├── Template.pdf ├── Template.snm ├── Template.synctex.gz ├── Template.tex └── Template.toc ├── Slide-soton ├── README ├── soton-beamer.sty ├── soton-palette.sty ├── soton.aux ├── soton.log ├── soton.nav ├── soton.out ├── soton.pdf ├── soton.snm ├── soton.synctex.gz ├── soton.tex └── soton.toc ├── Thesis-Slide ├── R-GLMM-pkgs.bib ├── Slide.aux ├── Slide.bbl ├── Slide.nav ├── Slide.out ├── Slide.pdf ├── Slide.snm ├── Slide.tex ├── Slide.toc ├── figure │ ├── Cloud2016.pdf │ ├── GeoDa-eps-converted-to.pdf │ ├── GeoDa.eps │ ├── PyMC3.pdf │ ├── bioconductor-eps-converted-to.pdf │ ├── bioconductor.eps │ ├── demo01.pdf │ ├── demo02.pdf │ ├── demo02bak.pdf │ ├── demo03.pdf │ ├── demo03bak.pdf │ ├── demo04.pdf │ ├── haroop.png │ ├── loaloa_ratio.pdf │ ├── logo.pdf │ ├── r.pdf │ ├── set_env_rstan.png │ └── stan.pdf └── 开题答辩.pdf ├── ThesisBeamer.zip ├── awesome-beamer.Rproj ├── customize-template ├── format.tex ├── template-0.png ├── template-1.png ├── template-10.png ├── template-11.png ├── template-2.png ├── template-3.png ├── template-4.png ├── template-5.png ├── template-6.png ├── template-7.png ├── template-8.png ├── template-9.png ├── template.pdf └── template.tex ├── simple-chinese-slide ├── R-GLMM-pkgs.bib ├── figures │ ├── logo.pdf │ ├── me.jpg │ └── yuanhui.pdf ├── thesis_slide-0.png ├── thesis_slide-1.png ├── thesis_slide-2.png ├── thesis_slide-3.png ├── thesis_slide-4.png ├── thesis_slide-5.png ├── thesis_slide-6.png ├── thesis_slide-7.png ├── thesis_slide.pdf └── thesis_slide.tex ├── slide-Cuerna ├── figure │ └── cumtb.pdf ├── slide-0.png ├── slide-1.png ├── slide-2.png ├── slide-3.png ├── slide-4.png ├── slide.pdf └── slide.tex ├── slide-Feather ├── Feathergraphics │ ├── 1.pdf │ └── cumtb.pdf ├── beamercolorthemeFeather.sty ├── beamerinnerthemeFeather.sty ├── beamerouterthemeFeather.sty ├── beamerthemeFeather.sty ├── slide.pdf ├── slide.synctex.gz └── slide.tex ├── slide-UIBK ├── beamerthemeUIBK.sty ├── logo │ ├── CUMTB_Badge.pdf │ └── CUMTB_Logo.pdf ├── sample.pdf ├── sample.synctex.gz ├── sample.tex └── src │ └── paragraph.ml ├── slide-mindmap ├── theme.aux ├── theme.log ├── theme.nav ├── theme.out ├── theme.pdf ├── theme.snm ├── theme.synctex.gz ├── theme.tex ├── theme.toc └── theme.vrb ├── slide-miniframes ├── answinter.bib ├── slide.aux ├── slide.bbl ├── slide.blg ├── slide.log ├── slide.nav ├── slide.out ├── slide.pdf ├── slide.snm ├── slide.synctex.gz ├── slide.tex ├── slide.toc └── slide.vrb └── spatial-generalized-linear ├── LICENSE ├── Apache_License.txt └── SIL_Open_Font_License.txt ├── README.md ├── config ├── custom-command.tex └── presento.sty ├── fonts ├── AlegreyaSansSC-Regular.otf ├── Inconsolata.otf ├── Lato-Lig.ttf ├── Montserrat-Bold.ttf ├── Montserrat-Regular.ttf ├── NotoSans-Bold.ttf ├── NotoSans-BoldItalic.ttf ├── NotoSans-Italic.ttf └── NotoSans-Regular.ttf ├── images ├── Rlogo.pdf ├── bg.pdf ├── cumtb.pdf └── skeleton.jpg ├── presento.pdf └── presento.tex /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | .Ruserdata 5 | *.log 6 | .DS_Store 7 | -------------------------------------------------------------------------------- /Qiao/graphicx.jpg: 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\gdef\HyperFirstAtBeginDocument#1{#1} 17 | \providecommand*\HyPL@Entry[1]{} 18 | -------------------------------------------------------------------------------- /Qiao/talk.nav: -------------------------------------------------------------------------------- 1 | \beamer@endinputifotherversion {3.36pt} 2 | \headcommand {\slideentry {0}{0}{1}{1/1}{}{0}} 3 | \headcommand {\beamer@framepages {1}{1}} 4 | \headcommand {\slideentry {0}{0}{2}{2/2}{}{0}} 5 | \headcommand {\beamer@framepages {2}{2}} 6 | \headcommand {\slideentry {0}{0}{3}{3/3}{}{0}} 7 | \headcommand {\beamer@framepages {3}{3}} 8 | \headcommand {\slideentry {0}{0}{4}{4/4}{}{0}} 9 | \headcommand {\beamer@framepages {4}{4}} 10 | \headcommand {\slideentry {0}{0}{5}{5/5}{}{0}} 11 | \headcommand {\beamer@framepages {5}{5}} 12 | \headcommand {\slideentry {0}{0}{6}{6/6}{}{0}} 13 | \headcommand {\beamer@framepages {6}{6}} 14 | \headcommand {\slideentry {0}{0}{7}{7/7}{}{0}} 15 | \headcommand {\beamer@framepages {7}{7}} 16 | \headcommand {\slideentry {0}{0}{8}{8/8}{}{0}} 17 | \headcommand {\beamer@framepages {8}{8}} 18 | \headcommand {\slideentry {0}{0}{9}{9/9}{}{0}} 19 | \headcommand {\beamer@framepages {9}{9}} 20 | \headcommand {\slideentry {0}{0}{10}{10/10}{}{0}} 21 | \headcommand {\beamer@framepages {10}{10}} 22 | \headcommand {\slideentry {0}{0}{11}{11/11}{}{0}} 23 | \headcommand {\beamer@framepages {11}{11}} 24 | \headcommand {\slideentry {0}{0}{12}{12/12}{}{0}} 25 | \headcommand {\beamer@framepages {12}{12}} 26 | \headcommand {\slideentry {0}{0}{13}{13/13}{}{0}} 27 | \headcommand {\beamer@framepages {13}{13}} 28 | \headcommand {\slideentry {0}{0}{14}{14/14}{}{0}} 29 | \headcommand {\beamer@framepages {14}{14}} 30 | \headcommand {\slideentry {0}{0}{15}{15/15}{}{0}} 31 | \headcommand {\beamer@framepages {15}{15}} 32 | \headcommand {\slideentry {0}{0}{16}{16/16}{}{0}} 33 | \headcommand {\beamer@framepages {16}{16}} 34 | \headcommand {\beamer@partpages {1}{16}} 35 | \headcommand {\beamer@subsectionpages {1}{16}} 36 | \headcommand {\beamer@sectionpages {1}{16}} 37 | \headcommand {\beamer@documentpages {16}} 38 | \headcommand {\def \inserttotalframenumber {16}} 39 | -------------------------------------------------------------------------------- /Qiao/talk.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/Qiao/talk.out -------------------------------------------------------------------------------- /Qiao/talk.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/Qiao/talk.pdf -------------------------------------------------------------------------------- /Qiao/talk.snm: -------------------------------------------------------------------------------- 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![thesis_slide-2](simple-chinese-slide/thesis_slide-2.png) 20 | 21 | ![thesis_slide-3](simple-chinese-slide/thesis_slide-3.png) 22 | 23 | 3. `Slide-AUTheme/` 24 | 25 | ![](Slide-AUTheme/presentation-0.png) 26 | 27 | ![presentation-1](Slide-AUTheme/presentation-1.png) 28 | 29 | ![presentation-2](Slide-AUTheme/presentation-2.png) 30 | -------------------------------------------------------------------------------- /Slide-AUTheme/figure/CUMTB.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/Slide-AUTheme/figure/CUMTB.pdf -------------------------------------------------------------------------------- /Slide-AUTheme/figure/JuliaOpt.pdf: -------------------------------------------------------------------------------- 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\setmainfont[Ligatures=TeX,Path=fonts/,BoldFont=NotoSans-Bold,ItalicFont=NotoSans-Italic,BoldItalicFont=NotoSans-BoldItalic,SmallCapsFont=AlegreyaSansSC-Regular]{NotoSans-Regular} 9 | \setsansfont[Ligatures=TeX,Path=fonts/,BoldFont=NotoSans-Bold,ItalicFont=NotoSans-Italic,BoldItalicFont=NotoSans-BoldItalic,SmallCapsFont=AlegreyaSansSC-Regular]{NotoSans-Regular} 10 | \setmonofont[Ligatures=TeX,Path=fonts/,SmallCapsFont=AlegreyaSansSC-Regular]{Inconsolata} 11 | 12 | \title{优化建模与开源工具} 13 | \author{黄湘云} 14 | \institute{计算数学与统计系，理学院} 15 | \date{\today} 16 | 17 | <>= 18 | library(knitr) 19 | knit_theme$set("fruit") 20 | opts_chunk$set(size="scriptsize") 21 | @ 22 | 23 | 24 | \begin{document} 25 | 26 | \frame{\titlepage} 27 | 28 | \section{非线性规划} 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | \section{Tools for Optimization} 54 | 55 | \begin{frame} 56 | \frametitle{Julia Language} 57 | \begin{figure}[htbp] 58 | \centering 59 | \includegraphics[width=\textwidth]{figure/JuliaOpt.pdf} 60 | \caption{JuliaOpt\footnote{图片来自\url{http://www.juliaopt.org/}}}\label{fig:JuliaOpt} 61 | \end{figure} 62 | \end{frame} 63 | 64 | \begin{frame} 65 | \frametitle{R Language} 66 | {\color{blue}\textsf{DMLC}}\footnote{\url{http://dmlc.ml/}} for Scalable and Reliable Machine Learning 67 | 68 | MXNet 69 | XGBoost 70 | 71 | h2o 72 | caret 73 | nnet 74 | e1071 75 | rpart 76 | randomForest 77 | RWeka RWekajars 78 | 79 | Caffe 80 | TensorFlow 81 | Tourch 82 | \end{frame} 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 | 100 | \end{document} 101 | -------------------------------------------------------------------------------- /Slide-AUTheme/presentation.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/Slide-AUTheme/presentation.pdf 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\documentclass{beamer} 5 | \definecolor{GreenDarkFaded}{rgb}{0,0.6,0} 6 | \definecolor{SpringGreenDark}{rgb}{0.2,0.6,0} 7 | \definecolor{GreenObscureWeak}{rgb}{0,0.2,0} 8 | \definecolor{GreenDarkDull}{rgb}{0.2,0.6,0.2} 9 | \mode 10 | { 11 | % \usetheme{PaloAlto} 12 | \usetheme{Berkeley} 13 | % \usetheme{Darmstadt} 14 | % \usetheme{Boadilla} 15 | \usecolortheme{spruce} 16 | \usecolortheme[named=GreenDarkDull]{structure} 17 | % \usecolortheme{orchid} 18 | % \usecolortheme{whale} 19 | % \usecolortheme{default} 20 | % \usecolortheme{wolverine} 21 | % \usecolortheme{crane} 22 | % \usecolortheme{rose} 23 | \setbeamercovered{transparent} 24 | } 25 | 26 | % \usepackage{pdfpages} 27 | % \includepdf{demo.pdf} % 插入pdf文件 28 | % \usepackage{navigator} 29 | % \embeddedfile[TeX code]{\jobname}{\jobname.tex} % 插入tex文件 30 | % \usepackage{attachfile} 31 | % \attachfile{demo.pdf} 32 | 33 | \usepackage[english]{babel} 34 | \usepackage[utf8]{inputenc} 35 | % \usepackage{times} 36 | % \usepackage[T1]{fontenc} 37 | 38 | \title[Model-Based Geostatistics] 39 | {Generalized Linear Geostatistical Models and Its Applications} 40 | 41 | \subtitle{Thesis Defense for Master Degree} 42 | 43 | \author[X.Y. Huang]{Xiang-Yun Huang\inst{1} \and XXX\inst{2}} 44 | 45 | \institute[CUMTB] % (optional, but mostly needed) 46 | { 47 | \inst{1-2}% 48 | Department of Mathematics\\ 49 | School of Science 50 | } 51 | 52 | \date[CUMTB 2018]{China University of Mining \& Technology, Beijing} 53 | 54 | \subject{Thesis Defense for Master Degree} 55 | 56 | \pgfdeclareimage[height=1.5cm]{university-logo}{cumtb} 57 | \logo{\pgfuseimage{university-logo}} 58 | % \titlegraphic{\pgfuseimage{university-logo}} 59 | \begin{document} 60 | 61 | \begin{frame} 62 | \titlepage 63 | \end{frame} 64 | 65 | \begin{frame}{Outline} 66 | \tableofcontents 67 | % You might wish to add the option [pausesections] 68 | \end{frame} 69 | 70 | \section{Motivation} 71 | 72 | \subsection{The Basic Problem That We Studied} 73 | 74 | \begin{frame}{Make Titles Informative. }{Subtitles are optional.} 75 | \begin{itemize} 76 | \item 77 | Use \texttt{itemize} a lot. 78 | \item 79 | Use very short sentences or short phrases. 80 | \end{itemize} 81 | \end{frame} 82 | 83 | 84 | % All of the following is optional and typically not needed. 85 | \appendix 86 | 87 | \begin{frame}[allowframebreaks] 88 | \frametitle{Some references} 89 | \begin{thebibliography}{10} 90 | 91 | \beamertemplatebookbibitems 92 | 93 | \bibitem{Diggle2007Model} 94 | Peter J. Diggle and Paulo J. {Ribeiro Jr}. 95 | \newblock {\em Model-based Geostatistics}. 96 | \newblock Springer-Verlag New York, 2007. 97 | 98 | \beamertemplatearticlebibitems 99 | 100 | \bibitem{Diggle2000Childhood} 101 | Peter Diggle, Rana Moyeed, Barry Rowlingson and Madeleine Thomson 102 | \newblock Childhood malaria in the Gambia: a case-study in model-based geostatistics. 103 | \newblock {\em Journal of the Royal Statistical Society: Series C}, 51(4):493--506, 104 | 2002. 105 | \end{thebibliography} 106 | \end{frame} 107 | 108 | \end{document} 109 | 110 | 111 | -------------------------------------------------------------------------------- /Slide-Berkeley/thesis.toc: -------------------------------------------------------------------------------- 1 | \babel@toc {english}{}\relax 2 | \beamer@sectionintoc {1}{Motivation}{3}{0}{1} 3 | \beamer@subsectionintoc {1}{1}{The Basic Problem That We Studied}{3}{0}{1} 4 | 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\subtitle{空间广义线性混合模型及其在预测流行病中的应用} 19 | \author{黄湘云 \and XXX} 20 | \institute{\includegraphics[width=10ex,interpolate=true]{logo} \\~~ \\ 理学院 \\ 中国矿业大学（北京）} 21 | \date{\today} 22 | % \logo{\includegraphics[width=.15\textwidth]{CUMTB}} 23 | \subject{硕士答辩} 24 | \keywords{混合效应模型} 25 | 26 | 27 | \begin{document} 28 | 29 | \maketitle 30 | 31 | \begin{frame} 32 | \frametitle{内容提要} 33 | \tableofcontents 34 | \end{frame} 35 | 36 | 37 | \section{引言} 38 | 39 | 40 | \subsection{研究意义} 41 | 42 | \begin{frame}{Examples} 43 | 44 | \begin{enumerate} 45 | \item radionuclide concentrations on Rongelap Island 46 | \item childhood malaria in the gambia 47 | \item Loa loa prevalence in Cameroon and surrounding areas 48 | \end{enumerate} 49 | 50 | \end{frame} 51 | 52 | \begin{frame}{Introduction} 53 | \citet{Diggle2002} 54 | \begin{itemize} 55 | \item the effects of child level covariates (age and bed net use) 56 | \item village level covariates (the primary health care and greenness of surrounding vegetation) 57 | \item separate components for residual spatial 58 | \item non-spatial extrabinomial variation 59 | \end{itemize} 60 | 61 | $\mathbb{R}^{n}$ 62 | 63 | $$\log \{p_{ij}/(1-p_{ij})\} =\alpha + \beta'z_{ij} + U_{i} + S(x_{i})$$ 64 | 65 | \end{frame} 66 | 67 | \subsection{文献综述} 68 | 69 | \subsection{主要内容} 70 | 71 | 72 | \section{模型(SGLMM)} 73 | 74 | \subsection{模型结构} 75 | 76 | \subsection{计算方法} 77 | 78 | \subsection{数据分析} 79 | 80 | \begin{frame} 81 | \begin{figure} 82 | \centering 83 | \includegraphics[width=.8\textwidth]{demo03} 84 | \end{figure} 85 | \end{frame} 86 | 87 | \section{结论与展望} 88 | 89 | 90 | 91 | \begin{frame} 92 | 93 | \centerline{\Huge\color{red} 谢谢！ } 94 | 95 | \end{frame} 96 | 97 | 98 | 99 | \begin{frame}[allowframebreaks] 100 | \frametitle{参考文献} 101 | \bibliographystyle{authordate1} 102 | \bibliography{R-GLMM-pkgs} 103 | \end{frame} 104 | 105 | \end{document} 106 | 107 | 108 | -------------------------------------------------------------------------------- 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/Slide-Steine/Steine.bbl: -------------------------------------------------------------------------------- 1 | \begin{thebibliography}{} 2 | 3 | \bibitem[\protect\citename{Diggle {\em et~al.}, }2002]{Diggle2002} 4 | Diggle, Peter, Moyeed, Rana, Rowlingson, Barry, \& Thomson, Madeleine. 2002. 5 | \newblock Childhood malaria in the Gambia: a case-study in model-based geostatistics. 6 | \newblock {\em Journal of the Royal Statistical Society: Series C (Applied Statistics)}, {\bf 51}(4), 493--506. 7 | 8 | \end{thebibliography} 9 | -------------------------------------------------------------------------------- /Slide-Steine/Steine.blg: -------------------------------------------------------------------------------- 1 | This is BibTeX, Version 0.99d (TeX Live 2023) 2 | Capacity: max_strings=200000, hash_size=200000, hash_prime=170003 3 | The top-level auxiliary file: Steine.aux 4 | The style file: authordate1.bst 5 | Database file #1: R-GLMM-pkgs.bib 6 | You've used 1 entry, 7 | 2441 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\begin{enumerate} 56 | \item radionuclide concentrations on Rongelap Island 57 | \item childhood malaria in the gambia 58 | \item Loa loa prevalence in Cameroon and surrounding areas 59 | \end{enumerate} 60 | 61 | \end{frame} 62 | 63 | \begin{frame}{Introduction} 64 | 65 | \citet{Diggle2002} 66 | \begin{itemize} 67 | \item the effects of child level covariates (age and bed net use) 68 | \item village level covariates (the primary health care and greenness of surrounding vegetation) 69 | \item separate components for residual spatial 70 | \item non-spatial extrabinomial variation 71 | \end{itemize} 72 | $\mathbb{R}^{n}$ 73 | $$\log \{p_{ij}/(1-p_{ij})\} =\alpha + \beta'z_{ij} + U_{i} + S(x_{i})$$ 74 | 75 | \end{frame} 76 | 77 | \subsection{文献综述} 78 | 79 | \subsection{主要内容} 80 | 81 | 82 | \section{模型(SGLMM)} 83 | 84 | \subsection{模型结构} 85 | 86 | \begin{frame}{Intro} 87 | 88 | \end{frame} 89 | 90 | \subsection{计算方法} 91 | 92 | \subsection{数据分析} 93 | 94 | \section{结论与展望} 95 | 96 | 97 | 98 | \begin{frame} 99 | \textbf{疟疾流行度与植被关系} 100 | \begin{figure} 101 | \centering 102 | \includegraphics[width=.75\textwidth]{demo03} 103 | \end{figure} 104 | \end{frame} 105 | 106 | 107 | 108 | 109 | 110 | \begin{frame} 111 | 112 | \centerline{\Huge\color{red} 谢谢！ } 113 | 114 | \end{frame} 115 | 116 | 117 | 118 | 119 | 120 | 121 | 122 | \begin{frame}{demo} 123 | \centering 124 | \includegraphics[width=.85\textheight]{demo03} \\ 125 | 126 | \flushleft 127 | \textbf{\underline{\textsc{Merke:}}\hspace{1em} Steine sind Perfektionisten!} 128 | \end{frame} 129 | 130 | 131 | 132 | \begin{frame}{hah} 133 | \centering 134 | \includegraphics[width=.85\textheight]{zufriedenheit} \\ 135 | 136 | \flushleft 137 | \textbf{\underline{\textsc{Merke:}}\hspace{1em} Steine sind Perfektionisten!} 138 | \end{frame} 139 | 140 | 141 | \begin{frame}[allowframebreaks] 142 | \frametitle{参考文献} 143 | \bibliographystyle{authordate1} 144 | \bibliography{R-GLMM-pkgs} 145 | \end{frame} 146 | 147 | \end{document} 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| 13 | \bibitem[\protect\citename{Gelman {\em et~al.}, }2015]{Stan2015} 14 | Gelman, Andrew, Lee, Daniel, Guo, Jiqiang, \& et~al. 2015. 15 | \newblock Stan: A Probabilistic Programming Language for Bayesian Inference and Optimization. 16 | \newblock {\em Journal of Educational and Behavioral Statistics}, {\bf 40}(5), 837--840. 17 | 18 | \bibitem[\protect\citename{Giorgi \& Diggle, }2016]{Giorgi2016} 19 | Giorgi, Emanuele, \& Diggle, Peter~J. 2016. 20 | \newblock PrevMap: an R package for prevalence mapping.(In press). 21 | \newblock {\em Journal of Statistical Software}. 22 | 23 | \bibitem[\protect\citename{{G{\'o}mez-Rubio} \& Rue, }2017]{Rue2017arXiv} 24 | {G{\'o}mez-Rubio}, Virgilio, \& Rue, H{\aa}vard. 2017. 25 | \newblock Markov Chain Monte Carlo with the Integrated Nested Laplace Approximation. 26 | \newblock {\em ArXiv e-prints}. 27 | 28 | \bibitem[\protect\citename{{Ribeiro Jr} \& Diggle, }2016]{R-geoR} 29 | {Ribeiro Jr}, Paulo~J., \& Diggle, Peter~J. 2016. 30 | \newblock {\em geoR: Analysis of Geostatistical Data}. 31 | \newblock R package version 1.7-5.2. 32 | 33 | \bibitem[\protect\citename{Ripley, }2015]{R-spatial} 34 | Ripley, Brian. 2015. 35 | \newblock {\em spatial: Functions for Kriging and Point Pattern Analysis}. 36 | \newblock R package version 7.3-11. 37 | 38 | \bibitem[\protect\citename{Rue {\em et~al.}, }2009]{Rue2009} 39 | Rue, H{\aa}vard, Martino, Sara, Chopin, Nicolas, \& et~al. 2009. 40 | \newblock Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations. 41 | \newblock {\em Journal of the Royal Statistical Society: Series B (Statistical Methodology)}, {\bf 71}(2), 319--392. 42 | 43 | \bibitem[\protect\citename{Rue {\em et~al.}, }2016]{R-INLA} 44 | Rue, H{\aa}vard, Martino, Sara, Lindgren, Finn, Simpson, Daniel, \& et~al. 2016. 45 | \newblock {\em INLA: Functions which Allow to Perform Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations}. 46 | \newblock R package version 0.0-1468872408. 47 | 48 | \bibitem[\protect\citename{Salvatier {\em et~al.}, }2016]{Salvatier2016} 49 | Salvatier, John, Wiecki, Thomas~V., \& Fonnesbeck, Christopher. 2016. 50 | \newblock Probabilistic programming in Python using PyMC3. 51 | \newblock {\em PeerJ Computer Science}, {\bf 2}(55). 52 | 53 | \end{thebibliography} 54 | -------------------------------------------------------------------------------- /Slide-TorinoTh/slide.blg: -------------------------------------------------------------------------------- 1 | This is BibTeX, Version 0.99d (TeX Live 2023) 2 | Capacity: max_strings=200000, hash_size=200000, hash_prime=170003 3 | The top-level auxiliary file: slide.aux 4 | The style file: authordate1.bst 5 | Database file #1: R-GLMM-pkgs.bib 6 | You've used 10 entries, 7 | 2441 wiz_defined-function locations, 8 | 632 strings with 5949 characters, 9 | and the built_in function-call counts, 3767 in all, are: 10 | = -- 362 11 | > -- 164 12 | < -- 34 13 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都灵理工学院 Politecnico of Torino 4 | % 模板维护者 Claudio Fiandrino 5 | % 官网 https://github.com/cfiandra/Beamer2Thesis 6 | \documentclass{beamer} 7 | \usetheme[titlepagelogo=logo, 8 | language=english, 9 | bullet=triangle, 10 | color=green, % red green blue 11 | ]{TorinoTh} 12 | \usepackage[beamer,customcolors]{hf-tikz} 13 | \hfsetfillcolor{alerted text.fg!10} 14 | \hfsetbordercolor{alerted text.fg} 15 | \usepackage{xeCJK} 16 | \usepackage{natbib} % 参考文献 17 | % \setsansfont{Ubuntu} 18 | % \setsansfont{Fira Sans} 19 | % \setsansfont{Roboto} 20 | 21 | \defaultfontfeatures{Mapping=tex-text} 22 | \setCJKmainfont[BoldFont=Noto Sans CJK SC, ItalicFont=Kaiti SC]{Noto Serif CJK SC} 23 | \setCJKmonofont[Scale=0.9]{Kaiti SC} 24 | \setCJKfamilyfont{song}[BoldFont=Noto Sans CJK SC]{Noto Serif CJK SC} 25 | \setCJKfamilyfont{sf}[BoldFont=Noto Sans CJK SC]{Noto Sans CJK SC} 26 | 27 | \renewcommand\contentsname{目录} 28 | \renewcommand\listfigurename{插图列表} 29 | \renewcommand\listtablename{表格列表} 30 | \renewcommand\refname{参考文献} 31 | \renewcommand\indexname{索引} 32 | \renewcommand\figurename{图} 33 | \renewcommand\tablename{表} 34 | \renewcommand\partname{部分} 35 | \renewcommand\appendixname{附录} 36 | \renewcommand\abstractname{摘要} 37 | 38 | 39 | \graphicspath{{figures/}} % 图片路径 40 | 41 | \author{黄湘云} % 答辩人 42 | \rel{XXX} % 导师 43 | \title{空间广义线性混合模型及其在预测流行病中的应用} 44 | \ateneo{硕士论文答辩} 45 | \date{\today} 46 | \keywords{SGLMM} 47 | \subject{硕士论文答辩} 48 | 49 | \begin{document} 50 | \titlepageframe 51 | 52 | \begin{tframe} 53 | 54 | \textbf{Outline} 55 | \begin{enumerate} 56 | \item Introduction (Motivations and goals) 57 | \item Literature reviews 58 | \item Geostatistical model (SGLMM) 59 | \item Computing details and simulations 60 | \item Real data analysis (Applications) 61 | \item Discussion 62 | \end{enumerate} 63 | \end{tframe} 64 | 65 | \section{Intro} 66 | 67 | \begin{tframe} 68 | \begin{figure} 69 | \centering 70 | \includegraphics[width=.8\textwidth]{demo01} 71 | \end{figure} 72 | \end{tframe} 73 | 74 | \begin{tframe} 75 | \begin{figure} 76 | \centering 77 | \includegraphics[width=.8\textwidth]{demo010} 78 | \end{figure} 79 | \end{tframe} 80 | 81 | \begin{tframe} 82 | \begin{figure} 83 | \centering 84 | \includegraphics[width=.8\textwidth]{demo011} 85 | \end{figure} 86 | \end{tframe} 87 | 88 | \begin{tframe} 89 | \begin{figure} 90 | \centering 91 | \includegraphics[width=.8\textwidth]{demo03} 92 | \end{figure} 93 | \end{tframe} 94 | 95 | 96 | 97 | \section{refs} 98 | 99 | \begin{frame}[allowframebreaks] 100 | \frametitle{Frameworks, Packages and Softwares} 101 | 102 | \begin{description} 103 | \item[\textbf{R:}] geoR geoRglm spatial PrevMap \\ 104 | \citet{R-geoR,R-geoRglm,R-spatial,Giorgi2016} 105 | 106 | \item[\textbf{Stan:}] Stan \footnote{\scriptsize \url{http://mc-stan.org/} } 107 | interfaces with R (RStan) ,Python (PyStan) , MATLAB (MatlabStan) 108 | and more \\ \citet{Stan2015,Stan2017} 109 | 110 | \item[\textbf{PyMC3:}] Probabilistic programming in Python using PyMC3 \\ \citet{Salvatier2016} 111 | 112 | \item[\textbf{JAGS:}] \textbf{J}ust \textbf{A}nother \textbf{G}ibbs \textbf{S}ampler \footnote{\scriptsize \url{https://en.wikipedia.org/wiki/Just_another_Gibbs_sampler}} \\ 113 | Bayesian hierarchical models using Markov chain Monte Carlo (MCMC) 114 | \item[\textbf{BUGS:}] \textbf{B}ayesian inference \textbf{U}sing \textbf{G}ibbs \textbf{S}ampling , 115 | such as winBUGS, OpenBUGS 116 | \item[\textbf{R-INLA:}] \textbf{I}ntegrated \textbf{N}ested \textbf{L}aplace \textbf{A}pproximations \\ 117 | \citet{Rue2009,R-INLA,Rue2017arXiv} 118 | \end{description} 119 | 120 | 121 | \end{frame} 122 | 123 | 124 | 125 | \begin{frame}[allowframebreaks] 126 | \bibliographystyle{authordate1} 127 | \bibliography{R-GLMM-pkgs} 128 | \end{frame} 129 | 130 | \end{document} 131 | 132 | 133 | -------------------------------------------------------------------------------- /Slide-TorinoTh/slide.toc: 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%%% The beamer themes info lines and mini frames were useful resources to work off of though others can also be used %%% 14 | %%% The two files (MedStarColors) and medstarbeamer.cls contain helpful comments to guide the user %%% -------------------------------------------------------------------------------- /Slide-medstar/beamercolorthemeMedStarColors.sty: -------------------------------------------------------------------------------- 1 | %%%%%%%%% MedStar Beamer Template %%%%%%%%% 2 | %%%%%%%% Written By: Anagha Kumar %%%%% 3 | %%%%%%%% License: lppl1.3 %%%%%%%%%%%%%%%% 4 | %%%%%%%% Version: 2015-11-12 %%%%%%%%%%%%%%%% 5 | %%%%%%%% Colortheme: MedStarColors %%%%%%%%%%%% 6 | 7 | \ProvidesPackage{beamercolorthemeMedStarColors} 8 | 9 | \definecolor{medstaryellow}{rgb}{0.91, 0.78, 0.04} % define your own colors 10 | \definecolor{medstarblue}{rgb}{0.0, 0.18, 0.33} % define your own colors 11 | \definecolor{medstarred}{rgb}{0.8, 0.0, 0.0} % taken from http://latexcolor.com/ 12 | 13 | \setbeamercolor*{date in head/foot}{parent=palette primary} % see below 14 | \setbeamercolor{author in head/foot}{parent=palette secondary} 15 | \setbeamercolor{title in head/foot}{parent=palette tertiary} 16 | 17 | \setbeamercolor{frametitle}{fg=medstarblue, bg=medstaryellow} 18 | \setbeamercolor{title}{fg=medstarblue} % controls the color of the title on the front page 19 | \setbeamercolor{subtitle}{fg=medstarblue} 20 | \setbeamercolor{palette primary}{fg=white, bg=medstarblue} % controls the foreground and background colors for the strip at the bottom right 21 | \setbeamercolor{palette secondary}{fg=white, bg=medstarblue} % controls the foreground and background colors for the bottom left strip and the second strip at the top 22 | \setbeamercolor{palette tertiary}{fg=medstarblue, bg=medstaryellow} %controls the foreground and background colors for the middle strip at the bottom and the top strip 23 | \setbeamercolor{author}{fg=medstarblue} 24 | \setbeamercolor{date}{fg=medstarblue} 25 | \setbeamercolor{normal text}{fg=medstarblue} % controls the font color on each slide - can be altered to something other than black 26 | \setbeamercolor{alerted text}{fg=medstarred} 27 | \setbeamercolor{caption}{fg=medstarblue} % because I want my captions in the medstar colors - this is an improvement over the default! 28 | \setbeamercolor{caption name}{fg=medstarblue} 29 | \setbeamercolor{item}{fg=medstarblue} % NOTE: works for other environments like enumerate. I think medstaryellow looks garish. 30 | \setbeamercolor{section in toc}{fg = medstarblue} 31 | \setbeamercolor{section in toc shaded}{fg = medstaryellow} 32 | \setbeamercolor{subsection in toc}{fg = medstarblue} 33 | \setbeamercolor{subsection in toc shaded}{fg = medstaryellow} 34 | \setbeamercolor{subsubsection in toc}{fg = medstarblue} 35 | \setbeamercolor{subsubsection in toc shaded}{fg = medstaryellow} 36 | 37 | % Can also set background color to something other than white if needed 38 | % \setbeamercolor{background canvas}{bg = blue!5} 39 | 40 | 41 | 42 | -------------------------------------------------------------------------------- /Slide-medstar/example.nav: -------------------------------------------------------------------------------- 1 | \headcommand {\slideentry {0}{0}{1}{1/1}{}{0}} 2 | \headcommand {\beamer@framepages {1}{1}} 3 | \headcommand {\slideentry {0}{0}{2}{2/2}{}{0}} 4 | \headcommand {\beamer@framepages {2}{2}} 5 | \headcommand {\sectionentry {1}{The Problem of Interest}{3}{The Problem of Interest}{0}} 6 | \headcommand {\beamer@sectionpages {1}{2}} 7 | \headcommand {\beamer@subsectionpages {1}{2}} 8 | \headcommand {\slideentry {1}{0}{1}{3/3}{}{0}} 9 | \headcommand {\beamer@framepages {3}{3}} 10 | \headcommand {\sectionentry {2}{New Section for Illustrative Purposes}{4}{New Section for Illustrative Purposes}{0}} 11 | \headcommand {\beamer@sectionpages {3}{3}} 12 | \headcommand {\beamer@subsectionpages {3}{3}} 13 | \headcommand {\slideentry {2}{0}{1}{4/4}{}{0}} 14 | \headcommand {\beamer@framepages {4}{4}} 15 | \headcommand {\beamer@subsectionentry {0}{2}{1}{5}{Does this work?}}\headcommand {\beamer@subsectionpages {4}{4}} 16 | \headcommand {\beamer@subsubsectionentry {0}{2}{1}{1}{5}{This is an interesting example}} 17 | \headcommand {\slideentry {2}{1}{1}{5/5}{Does this work?}{0}} 18 | \headcommand {\beamer@framepages {5}{5}} 19 | \headcommand {\sectionentry {3}{Let's Try Another One}{6}{Let's Try Another One}{0}} 20 | \headcommand 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\item{It was a hypothetical study of the mortality experience of diabetics.} 21 | \item{30 diabetics were followed till death or the end of the study.} 22 | \item{The subject's age at entry into the study and the age at the end of the study or death were recorded.} 23 | \item{Rather than time to event analysis, I was interested in how ``entry age" and ``exit age", affected survival.} 24 | \item{\alert{The response variable, survival, was binary (=1 if alive, =0 if dead).}} 25 | \end{enumerate} 26 | \end{frame} 27 | 28 | \section{New Section for Illustrative Purposes} 29 | \subsection{Does this work?} 30 | \subsubsection{This is an interesting example} 31 | \begin{frame}{Let's Try This Out} 32 | \end{frame} 33 | 34 | \section{Let's Try Another One} 35 | \subsection{Does this work as well?} 36 | \subsubsection{This is rather fun} 37 | \begin{frame}{Designing a custom color theme} 38 | \begin{itemize} 39 | \item{This is an interesting way of writing a beamer theme from scratch.} 40 | \end{itemize} 41 | \end{frame} 42 | 43 | 44 | \section{Let's Try Ansdsdsdsother One1} 45 | \subsection{Does this work as well111sdsds1?} 46 | \subsubsection{This is rather fu111sdsdsds111n} 47 | \begin{frame}{Designing a custom color theme} 48 | \begin{itemize} 49 | \item{This is an interesting way of writing a beamer theme from scratch.} 50 | \end{itemize} 51 | \end{frame} 52 | \end{document} -------------------------------------------------------------------------------- /Slide-medstar/example.toc: -------------------------------------------------------------------------------- 1 | \beamer@sectionintoc {1}{The Problem of Interest}{3}{0}{1} 2 | \beamer@sectionintoc {2}{New Section for Illustrative Purposes}{4}{0}{2} 3 | \beamer@subsectionintoc {2}{1}{Does this work?}{5}{0}{2} 4 | \beamer@subsubsectionintoc {2}{1}{1}{This is an interesting example}{5}{0}{2} 5 | \beamer@sectionintoc {3}{Let's Try Another One}{6}{0}{3} 6 | \beamer@subsectionintoc {3}{1}{Does this work as well?}{7}{0}{3} 7 | \beamer@subsubsectionintoc {3}{1}{1}{This is rather fun}{7}{0}{3} 8 | \beamer@sectionintoc {4}{Let's Try Ansdsdsdsother One1}{8}{0}{4} 9 | \beamer@subsectionintoc {4}{1}{Does this work as well111sdsds1?}{9}{0}{4} 10 | \beamer@subsubsectionintoc {4}{1}{1}{This is rather fu111sdsdsds111n}{9}{0}{4} 11 | -------------------------------------------------------------------------------- /Slide-medstar/medstarbeamer.cls: -------------------------------------------------------------------------------- 1 | %%%%%%%%% MedStar Beamer Template %%%%%%%%% 2 | %%%%%%%% Written By: Anagha Kumar %%%%% 3 | %%%%%%%% License: lppl1.3 %%%%%%%%%%%%%%%% 4 | %%%%%%%% Version: 2015-11-12 %%%%%%%%%%%%%%%% 5 | 6 | \NeedsTeXFormat{LaTeX2e} 7 | \ProvidesClass{medstarbeamer} 8 | \LoadClassWithOptions{beamer} 9 | \RequirePackage{anysize} 10 | \RequirePackage{hyperref} 11 | \RequirePackage{graphicx} 12 | \RequirePackage{pgf} 13 | \RequirePackage{xcolor} 14 | \RequirePackage{booktabs} 15 | \RequirePackage{soul} 16 | \RequirePackage{background} 17 | \RequirePackage{cancel} 18 | \RequirePackage{amsmath} 19 | \RequirePackage{enumerate} 20 | \RequirePackage{ifthen} 21 | 22 | \defbeamertemplate*{footline}{} 23 | { 24 | \hbox{% 25 | \begin{beamercolorbox}[wd=.3333333\paperwidth,ht=0.25cm,dp=0.2cm,center]{author in head/foot}% 26 | \usebeamerfont{author in head/foot}\insertshortauthor 27 | \end{beamercolorbox}% 28 | \begin{beamercolorbox}[wd=.3333333\paperwidth,ht=0.25cm,dp=0.2cm,center]{title in head/foot}% 29 | \usebeamerfont{title in head/foot}\insertshorttitle 30 | \end{beamercolorbox}% 31 | \begin{beamercolorbox}[wd=.3333333\paperwidth,ht=0.25cm,dp=0.2cm, center]{date in head/foot}% 32 | \usebeamerfont{date in head/foot}\insertshortdate{}\hfill \insertframenumber{} / \inserttotalframenumber 33 | \end{beamercolorbox}}% 34 | } 35 | % ht controls the height of the boxes. %I want the text in the boxes to be centered. %dp controls the depth 36 | 37 | \defbeamertemplate*{headline}{} 38 | { 39 | \begin{beamercolorbox}{section in head/foot} 40 | \vskip3pt\insertnavigation{\paperwidth}\vskip3pt 41 | \end{beamercolorbox}% 42 | \ifbeamer@theme@subsection% 43 | \begin{beamercolorbox}[ht=0.25cm,dp=0.2cm, leftskip=0.5cm]{subsection in head/foot} 44 | \usebeamerfont{subsection in head/foot}\insertsubsectionhead 45 | \end{beamercolorbox}% 46 | \fi 47 | } 48 | 49 | \setbeamersize{text margin left=0.5cm,text margin right=0.75 cm} % This is important to specify so that the margins and hence, typeset font can be controlled in each slide. I prefer cm over em. 50 | 51 | 52 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 53 | \usecolortheme{MedStarColors} 54 | \newif\ifbeamer@theme@subsection 55 | \beamer@theme@subsectiontrue %%%%%% adds in the blue line %%%% 56 | 57 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 58 | \logo{\includegraphics[ height=1.5cm, width=1.5cm]{medstarlogo}} %the size of the logo to be included in every frame 59 | 60 | \setbeamercovered{dynamic} %overlays appear faintly 61 | \setbeamertemplate{navigation symbols}{} % since I dislike the navigation symbols 62 | \setbeamertemplate{caption}[numbered] % since beamer does not number captions without setting this 63 | 64 | 65 | %%%%%%%%%%%%Shrinking the table of contents if needed %%%%%%%%%%%%%%%%%%%%%%%%%% 66 | \newcommand{\sizecontentsoutline}[1] 67 | { 68 | \ifnum#1=1 69 | \begin{frame} 70 | \tableofcontents 71 | \end{frame} 72 | \else 73 | \ifnum#1=2 74 | \begin{frame} 75 | \footnotesize{\tableofcontents} 76 | \end{frame} 77 | \fi 78 | } 79 | 80 | \newcommand{\sizecontentscurrent}[1] 81 | { 82 | \AtBeginSection{ 83 | \ifthenelse{\thesection > 1}{ 84 | \ifnum#1=1 85 | \begin{frame} 86 | \tableofcontents[currentsection] 87 | \end{frame} 88 | \else 89 | \ifnum#1=2 90 | \begin{frame} 91 | \footnotesize{\tableofcontents[currentsection]} 92 | \end{frame} 93 | \fi 94 | } 95 | } 96 | } 97 | 98 | % Define Author, Date, Institute, Title using small caps and different fonts - theme -------------------------------------------------------------------------------- /Slide-medstar/medstarlogo.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/Slide-medstar/medstarlogo.pdf -------------------------------------------------------------------------------- /Slide-seahorse/Template.aux: -------------------------------------------------------------------------------- 1 | \relax 2 | 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early 2008. This macro package builds on the 3 | enables the author to create UoS-compliant slides. 4 | 5 | Author's name: Max Blanco 6 | License type: lppl -------------------------------------------------------------------------------- /Slide-soton/soton-beamer.sty: -------------------------------------------------------------------------------- 1 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 2 | % filename: soton-beamer.sty 3 | % author: Max Blanco 4 | % contact: m.blanco 5 | % date: October 2009 6 | % version: 0.1 7 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 8 | % 9 | % style from University of Southampton document (ref SES728235.pdf) 10 | % 11 | % `Working with the new brand. Guidelines for designers' 12 | % 13 | % font `Freight' is unavailable to non-professionals 14 | % substitute font `Georgia' for academic presentations 15 | % 16 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 17 | % 18 | % Corrections, suggestions and contributions by: 19 | % 20 | % 21 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 22 | 23 | % \NeedsTexFormat{LaTeX2e} 24 | \ProvidesPackage{soton-beamer}[2009/10/13] 25 | 26 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 27 | 28 | \RequirePackage{soton-palette} % colour names listed here 29 | 30 | \setbeamercolor{background canvas}{bg=sotonblu} 31 | \setbeamercolor{button border}{bg=sotonblu, fg=sotonblu} 32 | \setbeamercolor{button}{bg=sotonblu, fg=DarkRed} 33 | 34 | \setbeamercolor{frametitle}{fg=sotonora} 35 | \setbeamercolor{alerted text}{fg=sotonora} 36 | \setbeamercolor{normal text}{fg=sotonbei} 37 | \setbeamercolor{titlelike}{fg=sotonora} 38 | \setbeamercolor{author}{fg=sotonbei} 39 | \setbeamercolor{date}{fg=sotonbei} 40 | \setbeamercolor{item}{fg=sotonmet} 41 | -------------------------------------------------------------------------------- /Slide-soton/soton-palette.sty: -------------------------------------------------------------------------------- 1 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 2 | % filename: soton-palette.sty 3 | % author: Max Blanco 4 | % contact: m.blanco 5 | % date: October 2009 6 | % version: 0.1 7 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 8 | % 9 | % description - University of Southampton palette translation from 10 | % rgb = {0,255} integer 11 | % to postscript/xcolor format 12 | % rgb = {0.,-1.} real 13 | % 14 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 15 | % 16 | % palette from University of Southampton document (ref SES728235.pdf) 17 | % 18 | % `Working with the new brand. Guidelines for designers' 19 | % 20 | % font `Freight' is unavailable to non-professionals 21 | % substitute font `Georgia' for academic presentations 22 | % 23 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 24 | % 25 | % Corrections, suggestions and contributions by: 26 | % 27 | % 28 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 29 | 30 | % \NeedsTexFormat{LaTeX2e} 31 | \ProvidesPackage{soton-palette}[2009/10/13] 32 | 33 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 34 | 35 | \RequirePackage{xcolor} 36 | 37 | 38 | %primary palette: RED GREEN BLUE 39 | \definecolor{sotonblu}{rgb}{.00392 .26275 .34902} % soton blue 40 | \definecolor{sotongrn}{rgb}{.00000 .44706 .45882} % soton green 41 | \definecolor{sotoncya}{rgb}{.03922 .58824 .66275} % soton cyan 42 | \definecolor{sotongry}{rgb}{.19608 .23922 .26275} % soton grey 43 | \definecolor{sotonbei}{rgb}{.59216 .61961 .27059} % soton beige 44 | 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-------------------------------------------------------------------------------- 1 | \begin{thebibliography}{} 2 | 3 | \bibitem[\protect\citename{Diggle {\em et~al.\ }\relax, }2002]{Diggle2002} 4 | Diggle, Peter, Moyeed, Rana, Rowlingson, Barry, \& Thomson, Madeleine. 2002. 5 | \newblock Childhood malaria in the Gambia: a case-study in model-based 6 | geostatistics. 7 | \newblock {\em Journal of the Royal Statistical Society: Series C (Applied 8 | Statistics)}, {\bf 51}(4), 493--506. 9 | 10 | \end{thebibliography} 11 | -------------------------------------------------------------------------------- /Thesis-Slide/Slide.nav: -------------------------------------------------------------------------------- 1 | \headcommand {\slideentry {0}{0}{1}{1/1}{}{0}} 2 | \headcommand {\beamer@framepages {1}{1}} 3 | \headcommand {\slideentry {0}{0}{2}{2/2}{}{0}} 4 | \headcommand {\beamer@framepages {2}{2}} 5 | \headcommand {\beamer@sectionpages {1}{2}} 6 | \headcommand {\beamer@subsectionpages {1}{2}} 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Translation]{Literal Translation} 36 | \subsection{直译} 37 | 38 | \begin{frame}{直译} 39 | 直译：顾名思义就是照字面意思来译。 40 | \begin{itemize} 41 | \item 简捷易行 42 | \item 保存原文的格调和“洋味” 43 | \item 求得译名与电影内容的统一美 44 | \item 有助于不断改进新鲜生动的词和说法 45 | \end{itemize} 46 | 47 | \end{frame} 48 | 49 | \begin{frame} 50 | \frametitle{英译汉--直译} 51 | \begin{columns} 52 | \column{0.6\textwidth} 53 | 54 | \begin{itemize} 55 | \item Ice Age 56 | \item The Hobbit 57 | \item The Great Gatsby 58 | \item Titanic 59 | \item Kung Fu Panda 60 | \item The Wolf of Wall Street 61 | \item Forrest Gump 62 | \item Modern Times 63 | \end{itemize} 64 | \pause 65 | \column{0.4\textwidth} 66 | \begin{itemize} 67 | \item 冰河世纪 68 | \item 霍比特人 69 | \item 了不起的盖茨比 70 | \item 泰坦尼克号 71 | \item 功夫熊猫 72 | \item 华尔街之狼 73 | \item 阿甘正传 74 | \item 摩登时代 75 | \end{itemize} 76 | \end{columns} 77 | \end{frame} 78 | 79 | 80 | 81 | \begin{frame}[fragile] 82 | \frametitle{汉译英--直译} 83 | \begin{columns} 84 | \column{0.4\textwidth} 85 | 86 | \begin{itemize} 87 | \item 澳门风云 88 | \item 龙门飞甲 89 | \item 红高粱 90 | \item 饮食男女 91 | \item 道士下山 92 | \item 色戒 93 | \item 功夫 94 | \item 智取威虎山 95 | \item 美人鱼 96 | \end{itemize} 97 | \pause 98 | \column{0.6\textwidth} 99 | \begin{itemize} 100 | \item The Man From Macau 101 | \item Flying Swords of Dragon Gate 102 | \item Red Sorghum 103 | \item Eat Drink Man Woman 104 | \item Monk Comes Down The Mountain 105 | \item Lust Caution 106 | \item Kung Fu Hustle 107 | \item The Taking of Tiger Mountain 108 | \item The Mermaid 109 | \end{itemize} 110 | \end{columns} 111 | \end{frame} 112 | 113 | \section[Creative Translation]{Creative Translation} 114 | \subsection{改译} 115 | 116 | 117 | \begin{frame} 118 | \frametitle{英译汉--改译} 119 | \begin{columns} 120 | \column{0.6\textwidth} 121 | 122 | \begin{itemize} 123 | \item Ghost 124 | \item Inception 125 | \item The Revenant 126 | \item Life of Pi 127 | \item The Bridges of Madison County 128 | \end{itemize} 129 | \pause 130 | \column{0.4\textwidth} 131 | \begin{itemize} 132 | \item 人鬼情未了 133 | \item 盗梦空间 134 | \item 荒野猎人 135 | \item 少年派的奇幻漂流 136 | \item 廊桥遗梦 137 | \end{itemize} 138 | \end{columns} 139 | \end{frame} 140 | 141 | 142 | 143 | 144 | 145 | 146 | 147 | \begin{frame}[fragile] 148 | \frametitle{汉译英--改译} 149 | \begin{columns} 150 | \column{0.4\textwidth} 151 | 152 | \begin{itemize} 153 | \item 剑雨 154 | \item 英雄本色 155 | \item 霸王别姬 156 | 157 | \end{itemize} 158 | \pause 159 | \column{0.6\textwidth} 160 | \begin{itemize} 161 | \item Reign of Assassins 162 | \item A Better Tomorrow 163 | \item Farewell My Concubine 164 | 165 | \end{itemize} 166 | \end{columns} 167 | \end{frame} 168 | 169 | 170 | 171 | 172 | 173 | 174 | 175 | 176 | 177 | 178 | 179 | 180 | 181 | 182 | 183 | 184 | 185 | 186 | 187 | 188 | 189 | 190 | 191 | 192 | 193 | 194 | 195 | 196 | 197 | 198 | 199 | 200 | 201 | 202 | 203 | 204 | 205 | 206 | 207 | 208 | 209 | 210 | \end{document} -------------------------------------------------------------------------------- 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\institute{\includegraphics[width=10ex,interpolate=true]{logo} \\~~ \\ 18 | 理学院\\ 计算数学与统计系 \\ 中国矿业大学（北京）} 19 | \date{ 2018年6月} 20 | 21 | 22 | \begin{document} 23 | 24 | \maketitle 25 | 26 | 27 | 28 | \begin{frame} 29 | 30 | \textbf{Outline 目录} 31 | \begin{enumerate} 32 | \item Introduction (Motivations and goals) 33 | \item Literature reviews 34 | \item Geostatistical model (SGLMM) 35 | \item Computing details and simulations 36 | \item Real data analysis (Applications) 37 | \item Discussion 38 | \end{enumerate} 39 | \end{frame} 40 | 41 | \section{介绍} 42 | 43 | \begin{frame} 44 | \textbf{背景} 45 | \begin{enumerate} 46 | \item Introduction (Motivations and goals) 47 | \item Literature reviews 48 | \item Geostatistical model (SGLMM) 49 | \item Computing details and simulations 50 | \item Real data analysis (Applications) 51 | \item Discussion 52 | \end{enumerate} 53 | \end{frame} 54 | 55 | \section{$\chi^2$极限分布} 56 | 57 | \begin{frame} 58 | \textbf{Outline } 59 | \begin{enumerate} 60 | \item Introduction (Motivations and goals) 61 | \item Literature reviews 62 | \item Geostatistical model (SGLMM) 63 | \item Computing details and simulations 64 | \item Real data analysis (Applications) 65 | \item Discussion 66 | \end{enumerate} 67 | \end{frame} 68 | 69 | 70 | 71 | 72 | \begin{frame}[allowframebreaks] 73 | \frametitle{Frameworks, Packages and Softwares} 74 | 75 | \begin{description} 76 | \item[\textbf{R:}] geoR geoRglm spatial PrevMap \\ 77 | \citet{R-geoR,R-geoRglm,R-spatial,Giorgi2016} 78 | 79 | \item[\textbf{Stan:}] Stan \footnote{\scriptsize \url{http://mc-stan.org/} } 80 | interfaces with R (RStan) ,Python (PyStan) , MATLAB (MatlabStan) 81 | and more \\ \citet{Stan2015,Stan2017} 82 | 83 | \item[\textbf{PyMC3:}] Probabilistic programming in Python using PyMC3 \\ \citet{Salvatier2016} 84 | 85 | \item[\textbf{JAGS:}] \textbf{J}ust \textbf{A}nother \textbf{G}ibbs \textbf{S}ampler \footnote{\scriptsize \url{https://en.wikipedia.org/wiki/Just_another_Gibbs_sampler}} \\ 86 | Bayesian hierarchical models using Markov chain Monte Carlo (MCMC) 87 | \item[\textbf{BUGS:}] \textbf{B}ayesian inference \textbf{U}sing \textbf{G}ibbs \textbf{S}ampling , 88 | such as winBUGS, OpenBUGS 89 | \item[\textbf{R-INLA:}] \textbf{I}ntegrated \textbf{N}ested \textbf{L}aplace \textbf{A}pproximations \\ 90 | \citet{Rue2009,R-INLA,Rue2017arXiv} 91 | \end{description} 92 | 93 | 94 | \end{frame} 95 | 96 | \section*{致谢} 97 | 98 | \begin{frame} 99 | \centering 100 | \color{red} 101 | % \Huge {\calligra{Thank You}}\\ 102 | \bigskip 103 | \color{Blue4} 104 | \normalsize 105 | \href{mailto:me@somewhere.com}{xiangyunfaith@outlook.com} \\ 106 | \href{https://github.com/Cloud2016}{https://github.com/Cloud2016} \\ 107 | \bigskip 108 | \includegraphics[width=10ex,interpolate=true]{me} 109 | \end{frame} 110 | 111 | 112 | \begin{frame}[allowframebreaks] 113 | \bibliographystyle{apalike} 114 | \bibliography{R-GLMM-pkgs} 115 | \end{frame} 116 | 117 | \end{document} 118 | 119 | 120 | 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\author{Xiangyun~Huang \and XXX \\ 19 | \texttt{XXX@outlook.com} } 20 | \institute[China University of Mining and Technology,Beijing] 21 | { 22 | Department of Statistics\\ % Computational mathematics 23 | China University of Mining and Technology,Beijing 24 | } 25 | \date{\today} 26 | 27 | \begin{document} 28 | 29 | 30 | \begin{frame} 31 | \titlepage 32 | \end{frame} 33 | 34 | \begin{frame} 35 | \frametitle{Outline} 36 | \begin{itemize} 37 | \item Motivation 38 | \item Introduction 39 | \item Geostatistical model 40 | \item Real data analysis (Applications) 41 | \item Discussion 42 | \end{itemize} 43 | \end{frame} 44 | 45 | \section{Introduction} 46 | \subsection{Motivation} 47 | \begin{frame} 48 | \frametitle{Title of the slide} 49 | \framesubtitle{Subtitle} 50 | Some text on top of this slide 51 | \[ 52 | \int_{0}^{\infty} \frac{5x^2}{\sqrt{a+b}}\, dx 53 | \] 54 | \begin{itemize} 55 | \item[\checkmark] Fist item in the list 56 | \item Second item 57 | \item Another item 58 | \item And finally, the last item 59 | \end{itemize} 60 | \end{frame} 61 | 62 | \begin{frame}{预测任务} 63 | \begin{itemize} 64 | \item 重金属浓度最高的位置 （最大值） 65 | \item 重金属浓度超过给定值的区域 （区间估计） 66 | \item 重金属在某个区域的含量 （积分） 67 | \end{itemize} 68 | \end{frame} 69 | 70 | \begin{frame} 71 | \begin{figure} 72 | \centering 73 | \includegraphics[width=.7\textwidth]{cumtb} 74 | \end{figure} 75 | \end{frame} 76 | 77 | 78 | \end{document} 79 | 80 | -------------------------------------------------------------------------------- /slide-Feather/Feathergraphics/1.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/slide-Feather/Feathergraphics/1.pdf -------------------------------------------------------------------------------- /slide-Feather/Feathergraphics/cumtb.pdf: -------------------------------------------------------------------------------- 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See the 12 | % GNU General Public License for more details. 13 | % 14 | % You can find the GNU General Public License at . 15 | 16 | %---------------------------------------------------------------------------------------------------------------------------------- 17 | 18 | \NeedsTeXFormat{LaTeX2e} 19 | \ProvidesPackage{beamercolorthemeFeather}[2014/04/08 v1.0.0 The Feather Beamer Theme] 20 | 21 | %---------------------------------------------------------------------------------------------------------------------------------- 22 | 23 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 24 | % Theme options and definitions 25 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26 | 27 | %---------------------------------------------------------------------------------------------------------------------------------- 28 | 29 | % beamer specific options 30 | 31 | \mode%refers to the first four modes (beamer,handout,second and trans). That is, to all modes except the article mode 32 | { 33 | 34 | %---------------------------------------------------------------------------------------------------------------------------------- 35 | 36 | % colors 37 | %% defining colors 38 | 39 | \definecolor{beamer@barcolor}{RGB}{194,193,204}% light blue 40 | \definecolor{beamer@normaltextcolor}{RGB}{84,97,110}% gray blue 41 | \definecolor{beamer@headercolor}{rgb}{0,0.41,0.54} % dark blue 42 | 43 | 44 | %% setting the above deffinitions 45 | 46 | \setbeamercolor{structure}{fg=beamer@headercolor} 47 | \setbeamercolor{normal text}{fg=beamer@normaltextcolor} 48 | \setbeamercolor{frametitle}{fg=white,bg=beamer@headercolor} 49 | \setbeamercolor{Feather}{fg=beamer@barcolor,bg=beamer@headercolor} 50 | } 51 | 52 | \mode -------------------------------------------------------------------------------- /slide-Feather/beamerinnerthemeFeather.sty: -------------------------------------------------------------------------------- 1 | % This is the inner theme file of the Feather theme. 2 | % Copyright (c) 2014 by Lilyana Vaskova Vankova 3 | % 4 | % This program is free software: you can redistribute it and/or modify 5 | % it under the terms of the GNU General Public License as published by 6 | % the Free Software Foundation, either version 3 of the License, or 7 | % (at your option) any later version. 8 | % 9 | % This program is distributed in the hope that it will be useful, 10 | % but WITHOUT ANY WARRANTY; without even the implied warranty of 11 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 12 | % GNU General Public License for more details. 13 | % 14 | % You can find the GNU General Public License at . 15 | 16 | %---------------------------------------------------------------------------------------------------------------------------------- 17 | 18 | \NeedsTeXFormat{LaTeX2e} 19 | \ProvidesPackage{beamerinnerthemeFeather}[2014/04/08 v1.0.0 The Feather Beamer Theme] 20 | 21 | %---------------------------------------------------------------------------------------------------------------------------------- 22 | 23 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 24 | % Theme options, definitions and templates. 25 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26 | 27 | %---------------------------------------------------------------------------------------------------------------------------------- 28 | 29 | % beamer specific options 30 | 31 | \mode %refers to the first four modes (beamer,handout,second and trans). That is, to all modes except the article mode 32 | { 33 | 34 | %---------------------------------------------------------------------------------------------------------------------------------- 35 | 36 | % title page 37 | %% definitions for fonts of the different elements 38 | 39 | \setbeamerfont{institute}{family=\rmfamily, size = \footnotesize} 40 | \setbeamerfont{title}{family=\rmfamily, size = \Large} 41 | \setbeamerfont{subtitle}{family=\rmfamily, size = \large} 42 | \setbeamerfont{author}{family=\rmfamily, size = \normalsize} 43 | \setbeamerfont{date}{family=\rmfamily, size = \footnotesize} 44 | 45 | \setbeamertemplate{title page} 46 | { 47 | 48 | %% setting the above deffinitions 49 | 50 | \begin{minipage}[c][\textheight][c]{\textwidth} 51 | 52 | \centering 53 | 54 | {\usebeamerfont{institute}\insertinstitute}\vspace*{30pt} 55 | 56 | {\usebeamerfont{title}\usebeamercolor[fg]{title}\inserttitle}\vspace*{10pt} 57 | 58 | {\usebeamerfont{subtitle}\usebeamercolor[fg]{subtitle}\insertsubtitle}\vspace*{30pt} 59 | 60 | {\usebeamerfont{author}\insertauthor}\vspace*{30pt} 61 | 62 | {\usebeamerfont{date}\insertdate}\vspace*{\baselineskip} 63 | 64 | \end{minipage} 65 | } 66 | 67 | %---------------------------------------------------------------------------------------------------------------------------------- 68 | 69 | % final page 70 | 71 | \defbeamertemplate{final page}{text}[1] 72 | { 73 | \begin{minipage}[c][\textheight][c]{\textwidth} 74 | \centering 75 | #1 76 | \end{minipage} 77 | } 78 | \newcommand{\finalpage}[1] 79 | { 80 | \setbeamertemplate{final page}[text]{#1} 81 | \usebeamertemplate{final page} 82 | } 83 | 84 | %---------------------------------------------------------------------------------------------------------------------------------- 85 | 86 | % add the feather to the background of the titlepage and the final page 87 | 88 | \newcommand{\1} 89 | { 90 | \setbeamertemplate{background} 91 | { 92 | \includegraphics[height=.2\paperheight]{Feathergraphics/cumtb} 93 | \tikz[overlay] \fill[fill opacity=1.0,fill=white] (0,0) rectangle (-\paperwidth,\paperheight); 94 | } 95 | } 96 | 97 | %---------------------------------------------------------------------------------------------------------------------------------- 98 | 99 | % use numbers instead of a picture for the references 100 | 101 | \setbeamertemplate{bibliography item}[text] 102 | 103 | } 104 | 105 | \mode -------------------------------------------------------------------------------- /slide-Feather/beamerthemeFeather.sty: -------------------------------------------------------------------------------- 1 | % This is the main beamer theme file of the Feather theme. 2 | % Copyright (c) 2014 by Lilyana Vaskova Vankova 3 | % 4 | % This program is free software: you can redistribute it and/or modify 5 | % it under the terms of the GNU General Public License as published by 6 | % the Free Software Foundation, either version 3 of the License, or 7 | % (at your option) any later version. 8 | % 9 | % This program is distributed in the hope that it will be useful, 10 | % but WITHOUT ANY WARRANTY; without even the implied warranty of 11 | % MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 12 | % GNU General Public License for more details. 13 | % 14 | % You can find the GNU General Public License at . 15 | 16 | %---------------------------------------------------------------------------------------------------------------------------------- 17 | 18 | \NeedsTeXFormat{LaTeX2e} 19 | \ProvidesPackage{beamerthemeFeather}[2014/04/08 v1.0.0 The Feather Beamer Theme] 20 | 21 | %---------------------------------------------------------------------------------------------------------------------------------- 22 | 23 | % load required packages 24 | 25 | \RequirePackage{tikz} 26 | \RequirePackage{calc} 27 | 28 | %---------------------------------------------------------------------------------------------------------------------------------- 29 | 30 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 31 | % Theme options and definitions 32 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 33 | 34 | %---------------------------------------------------------------------------------------------------------------------------------- 35 | 36 | \DeclareOptionBeamer{progressstyle}{\PassOptionsToPackage{progressstyle=#1}{beamerouterthemeFeather}} 37 | \DeclareOptionBeamer{rotationcw}{\PassOptionsToPackage{rotationcw}{beamerouterthemeFeather}} 38 | \DeclareOptionBeamer{shownavsym}{\PassOptionsToPackage{shownavsym}{beamerouterthemeFeather}} 39 | \ProcessOptionsBeamer 40 | 41 | %---------------------------------------------------------------------------------------------------------------------------------- 42 | 43 | %beamer specific options 44 | 45 | \mode %refers to the first four modes (beamer, handout, second and trans). 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Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet. 85 | \end{block} 86 | \begin{block}{Observation} 87 | Simmons Dormitory is composed of brick. 88 | \end{block} 89 | \end{frame} 90 | 91 | 92 | \section{Code} 93 | \begin{frame}{OCaml Code} 94 | \begin{center} 95 | \begin{block}{Paragraph function} 96 | Write a function 'paragraph' that constructs a picture of width w of some text t, such that the content splits into as many lines as needed to fit into a paragraph of w columns. 97 | \end{block} 98 | \begin{block}{paragraph.ml} 99 | {\small \lstinputlisting[language=ml]{src/paragraph.ml} } 100 | \end{block} 101 | \end{center} 102 | \end{frame} 103 | 104 | 105 | %final slide 106 | \begin{frame}[plain,noframenumbering] 107 | \begin{beamercolorbox}[wd=\paperwidth, ht=1.4cm,rounded=true,shadow=true]{final slide} 108 | \begin{center} 109 | {\huge Thank you for your attention!} 110 | \end{center} 111 | \end{beamercolorbox} 112 | \end{frame} 113 | 114 | 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7 | \global\let\oldnewlabel\newlabel 8 | \gdef\newlabel#1#2{\newlabelxx{#1}#2} 9 | \gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}} 10 | \AtEndDocument{\ifx\hyper@anchor\@undefined 11 | \let\contentsline\oldcontentsline 12 | \let\newlabel\oldnewlabel 13 | \fi} 14 | \fi} 15 | \global\let\hyper@last\relax 16 | \gdef\HyperFirstAtBeginDocument#1{#1} 17 | \providecommand\HyField@AuxAddToFields[1]{} 18 | \providecommand\HyField@AuxAddToCoFields[2]{} 19 | \citation{pyne_intro} 20 | \citation{scopatz_pyne} 21 | \citation{pyne_progress} 22 | \citation{Biondo2014} 23 | \citation{MarquezDamian2014280} 24 | \citation{Scopatz2013a} 25 | \citation{pyne_vnv} 26 | \citation{scipy} 27 | \@writefile{nav}{\headcommand {\slideentry {0}{0}{1}{1/1}{}{0}}} 28 | \@writefile{nav}{\headcommand {\beamer@framepages {1}{1}}} 29 | \bibstyle{authordate1} 30 | \bibdata{answinter} 31 | \bibcite{pyne_progress}{{1}{2014}{{Bates {\em et~al.\ }\relax }}{{}}} 32 | \bibcite{Biondo2014}{{2}{2014a}{{Biondo {\em et~al.\ }\relax }}{{}}} 33 | \bibcite{pyne_vnv}{{3}{2014b}{{Biondo {\em et~al.\ }\relax }}{{}}} 34 | \bibcite{MarquezDamian2014280}{{4}{2014}{{Damián {\em et~al.\ }\relax }}{{}}} 35 | \bibcite{Scopatz2013a}{{5}{2013}{{Scopatz}}{{}}} 36 | \bibcite{pyne_intro}{{6}{2012a}{{Scopatz {\em et~al.\ }\relax }}{{}}} 37 | \bibcite{scipy}{{7}{2012b}{{Scopatz {\em et~al.\ }\relax }}{{}}} 38 | \bibcite{scopatz_pyne}{{8}{2013}{{Scopatz {\em et~al.\ }\relax }}{{}}} 39 | \@writefile{nav}{\headcommand {\sectionentry {1}{\translate {References}}{2}{\translate {References}}{0}}} 40 | \@writefile{nav}{\headcommand {\beamer@sectionpages {1}{1}}} 41 | \@writefile{nav}{\headcommand {\beamer@subsectionpages {1}{1}}} 42 | \@writefile{nav}{\headcommand {\slideentry {1}{0}{0}{2/2}{}{0}}} 43 | \@writefile{nav}{\headcommand {\beamer@framepages {2}{2}}} 44 | \@writefile{nav}{\headcommand {\slideentry {1}{0}{0}{2/3}{}{0}}} 45 | \@writefile{nav}{\headcommand {\beamer@framepages {2}{3}}} 46 | \@writefile{nav}{\headcommand {\beamer@partpages {1}{3}}} 47 | \@writefile{nav}{\headcommand {\beamer@subsectionpages {1}{3}}} 48 | \@writefile{nav}{\headcommand {\beamer@sectionpages {1}{3}}} 49 | \@writefile{nav}{\headcommand {\beamer@documentpages {3}}} 50 | \@writefile{nav}{\headcommand {\def \inserttotalframenumber {3}}} 51 | -------------------------------------------------------------------------------- /slide-miniframes/slide.bbl: -------------------------------------------------------------------------------- 1 | \begin{thebibliography}{} 2 | 3 | \bibitem[\protect\citename{Bates {\em et~al.\ }\relax, }2014]{pyne_progress} 4 | Bates, Cameron, Biondo, Elliott, Huff, Kathryn, \& et~al. 2014 (Nov.). 5 | \newblock {PyNE Progress Report}. 6 | \newblock {\em In:} {\em Am. Nuc. Soc. Winter Meeting 2014}, vol. 111. 7 | 8 | \bibitem[\protect\citename{Biondo {\em et~al.\ }\relax, }2014a]{Biondo2014} 9 | Biondo, E., Davis, A., Scopatz, A., \& Wilson, P. P.~H. 2014a. 10 | \newblock {Rigorous Two-Step Activation for Fusion Systems with PyNE}. 11 | \newblock {\em In:} {\em Proc. of the 18th Topical Meeting of the Radiation 12 | Protection \& Shielding Division of ANS}. 13 | 14 | \bibitem[\protect\citename{Biondo {\em et~al.\ }\relax, }2014b]{pyne_vnv} 15 | Biondo, Elliott, Scopatz, Anthony, Gidden, Matthew, Slaybaugh, Rachel, \& 16 | Bates, Cameron. 2014b (Nov.). 17 | \newblock {Quality Assurance within the PyNE Open Source Toolkit}. 18 | \newblock {\em In:} {\em Am. Nuc. Soc. Winter Meeting 2014}, vol. 111. 19 | 20 | \bibitem[\protect\citename{Damián {\em et~al.\ }\relax, 21 | }2014]{MarquezDamian2014280} 22 | Damián, J.I.~Márquez, Granada, J.R., \& Malaspina, D.C. 2014. 23 | \newblock \{CAB\} models for water: A new evaluation of the thermal neutron 24 | scattering laws for light and heavy water in ENDF-6 format. 25 | \newblock {\em Annals of Nuclear Energy}, {\bf 65}(0), 280 -- 289. 26 | 27 | \bibitem[\protect\citename{Scopatz, }2013]{Scopatz2013a} 28 | Scopatz, Anthony. 2013 (May). 29 | \newblock {First \& second order approximations to stage numbers in 30 | multicomponent enrichment cascades}. 31 | \newblock {\em In:} {\em {International Conference on Mathematics and 32 | Computational Methods Applied to Nuclear Science \& Engineering (M\&C 33 | 2013)}}. 34 | 35 | \bibitem[\protect\citename{Scopatz {\em et~al.\ }\relax, }2012a]{pyne_intro} 36 | Scopatz, Anthony, Romano, Paul~K., Wilson, Paul~P.H., \& Huff, Kathryn~D. 2012a 37 | (Nov.). 38 | \newblock {PyNE: Python for Nuclear Engineering}. 39 | \newblock {\em In:} {\em Am. Nuc. Soc. Winter Meeting 2012}, vol. 107. 40 | 41 | \bibitem[\protect\citename{Scopatz {\em et~al.\ }\relax, }2012b]{scipy} 42 | Scopatz, Anthony, Romano, Paul, Wilson, Paul, Slaybaugh, Rachel, Huff, Katy, \& 43 | Relson, Eric. 2012b (July). 44 | \newblock {PyNE: Python for Nuclear Engineering}. 45 | \newblock {\em In:} {\em SciPy 2012}. 46 | 47 | \bibitem[\protect\citename{Scopatz {\em et~al.\ }\relax, }2013]{scopatz_pyne} 48 | Scopatz, Anthony, Biondo, Elliott~D., Brachem, Carsten, Xia, John, \& Wilson, 49 | Paul P.~H. 2013 (Nov.). 50 | \newblock {PyNE Progress Report}. 51 | \newblock {\em In:} {\em {Am. Nuc. Soc. Winter Meeting 2013}}, vol. 109. 52 | 53 | \end{thebibliography} 54 | -------------------------------------------------------------------------------- /slide-miniframes/slide.blg: -------------------------------------------------------------------------------- 1 | This is BibTeX, Version 0.99d (TeX Live 2016/W32TeX) 2 | Capacity: max_strings=100000, hash_size=100000, hash_prime=85009 3 | The top-level auxiliary file: slide.aux 4 | The style file: authordate1.bst 5 | Database file #1: answinter.bib 6 | You've used 8 entries, 7 | 2441 wiz_defined-function locations, 8 | 617 strings with 5812 characters, 9 | and the built_in function-call counts, 3077 in all, are: 10 | = -- 268 11 | > -- 157 12 | < -- 24 13 | + -- 49 14 | - -- 47 15 | * -- 265 16 | := -- 539 17 | add.period$ -- 32 18 | call.type$ -- 8 19 | change.case$ -- 48 20 | chr.to.int$ -- 6 21 | cite$ -- 8 22 | duplicate$ -- 107 23 | empty$ -- 232 24 | format.name$ -- 48 25 | if$ -- 627 26 | int.to.chr$ -- 3 27 | int.to.str$ -- 0 28 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5 | \usepackage{graphicx} 6 | \usepackage{tikz} 7 | \usepackage{Tabbing} 8 | \usetikzlibrary{decorations.fractals} 9 | \usepackage{fancyvrb} 10 | \usepackage{natbib} 11 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 12 | 13 | %% Beamer Layout %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 14 | \useoutertheme[subsection=false,shadow]{miniframes} 15 | \usepackage{tabu} 16 | % Links 17 | \usepackage{hyperref} 18 | \definecolor{links}{HTML}{003262} 19 | 20 | % addition of color 21 | \usepackage{xcolor} 22 | \definecolor{CoolBlack}{rgb}{0.0, 0.18, 0.39} 23 | \definecolor{byellow}{rgb}{0.55037, 0.38821, 0.06142} 24 | \definecolor{dgreen}{rgb}{0.,0.6,0.} 25 | \definecolor{RawSienna}{cmyk}{0,0.72,1,0.45} 26 | \definecolor{forestgreen(web)}{rgb}{0.13, 0.55, 0.13} 27 | \definecolor{cardinal}{rgb}{0.77, 0.12, 0.23} 28 | 29 | \setbeamerfont{title like}{shape=\scshape} 30 | \setbeamerfont{frametitle}{shape=\scshape} 31 | 32 | \setbeamercolor*{lower separation line head}{bg=CoolBlack} 33 | \setbeamercolor*{normal text}{fg=black,bg=white} 34 | \setbeamercolor*{alerted text}{fg=dgreen} % just testing; I think this looks better 35 | \setbeamercolor*{example text}{fg=black} 36 | \setbeamercolor*{structure}{fg=black} 37 | 38 | \setbeamercolor*{palette tertiary}{fg=black,bg=black!10} 39 | \setbeamercolor*{palette quaternary}{fg=black,bg=black!10} 40 | 41 | % Margins 42 | \usepackage{changepage} 43 | 44 | \mode 45 | { 46 | \definecolor{berkeleyblue}{HTML}{003262} 47 | \definecolor{berkeleygold}{HTML}{FDB515} 48 | \usetheme{Boadilla} % or try Darmstadt, Madrid, Warsaw, Boadilla... 49 | %\usecolortheme{dove} % or try albatross, beaver, crane, ... 50 | \setbeamercolor{structure}{fg=berkeleyblue,bg=berkeleygold} 51 | \setbeamercolor{palette primary}{bg=berkeleyblue,fg=white} % changed this 52 | \setbeamercolor{palette secondary}{fg=berkeleyblue,bg=berkeleygold} % changed this 53 | \setbeamercolor{palette tertiary}{bg=berkeleyblue,fg=white} % changed this 54 | 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\begin{frame}[fragile]{PyNE In the Literature} 97 | 98 | \begin{itemize} 99 | \item Intro: ``PyNE: Python For Nuclear Engineering'' \cite{pyne_intro} 100 | \item Progress reports: \cite{scopatz_pyne}, \cite{pyne_progress} 101 | \item In research: \cite{Biondo2014}, \cite{MarquezDamian2014280}, \cite{Scopatz2013a} 102 | \item V\&V: ``Quality Assurance within the PyNE Open Source \\Toolkit'' \cite{pyne_vnv} 103 | \item Poster at SciPy: \cite{scipy} 104 | \end{itemize} 105 | 106 | \end{frame} 107 | % -------------------------------------------------------------- 108 | \begin{frame}[allowframebreaks]{References} 109 | % \bibliographystyle{unsrt} 110 | \bibliographystyle{authordate1} 111 | \bibliography{answinter} 112 | \end{frame} 113 | 114 | \end{document} -------------------------------------------------------------------------------- /slide-miniframes/slide.toc: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- 1 | This Font Software is licensed under the SIL Open Font License, Version 1.1. 2 | This license is copied below, and is also available with a FAQ at: http://scripts.sil.org/OFL 3 | 4 | ----------------------------------------------------------- 5 | SIL OPEN FONT LICENSE Version 1.1 - 26 February 2007 6 | ----------------------------------------------------------- 7 | 8 | PREAMBLE 9 | The goals of the Open Font License (OFL) are to stimulate worldwide development of collaborative font projects, to support the font creation efforts of academic and linguistic communities, and to provide a free and open framework in which fonts may be shared and improved in partnership with others. 10 | 11 | The OFL allows the licensed fonts to be used, studied, modified and redistributed freely as long as they are not sold by themselves. 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This may include source files, build scripts and documentation. 15 | 16 | "Reserved Font Name" refers to any names specified as such after the copyright statement(s). 17 | 18 | "Original Version" refers to the collection of Font Software components as distributed by the Copyright Holder(s). 19 | 20 | "Modified Version" refers to any derivative made by adding to, deleting, or substituting -- in part or in whole -- any of the components of the Original Version, by changing formats or by porting the Font Software to a new environment. 21 | 22 | "Author" refers to any designer, engineer, programmer, technical writer or other person who contributed to the Font Software. 23 | 24 | PERMISSION & CONDITIONS 25 | Permission is hereby granted, free of charge, to any person obtaining a copy of the Font Software, to use, study, copy, merge, embed, modify, redistribute, and sell modified and unmodified copies of the Font Software, subject to the following conditions: 26 | 27 | 1) Neither the Font Software nor any of its individual components, in Original or Modified Versions, may be sold by itself. 28 | 29 | 2) Original or Modified Versions of the Font Software may be bundled, redistributed and/or sold with any software, provided that each copy contains the above copyright notice and this license. These can be included either as stand-alone text files, human-readable headers or in the appropriate machine-readable metadata fields within text or binary files as long as those fields can be easily viewed by the user. 30 | 31 | 3) No Modified Version of the Font Software may use the Reserved Font Name(s) unless explicit written permission is granted by the corresponding Copyright Holder. This restriction only applies to the primary font name as presented to the users. 32 | 33 | 4) The name(s) of the Copyright Holder(s) or the Author(s) of the Font Software shall not be used to promote, endorse or advertise any Modified Version, except to acknowledge the contribution(s) of the Copyright Holder(s) and the Author(s) or with their explicit written permission. 34 | 35 | 5) The Font Software, modified or unmodified, in part or in whole, must be distributed entirely under this license, and must not be distributed under any other license. The requirement for fonts to remain under this license does not apply to any document created using the Font Software. 36 | 37 | TERMINATION 38 | This license becomes null and void if any of the above conditions are not met. 39 | 40 | DISCLAIMER 41 | THE FONT SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF COPYRIGHT, PATENT, TRADEMARK, OR OTHER RIGHT. IN NO EVENT SHALL THE COPYRIGHT HOLDER BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, INCLUDING ANY GENERAL, SPECIAL, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF THE USE OR INABILITY TO USE THE FONT SOFTWARE OR FROM OTHER DEALINGS IN THE FONT SOFTWARE. -------------------------------------------------------------------------------- /spatial-generalized-linear/config/custom-command.tex: -------------------------------------------------------------------------------- 1 | % custom packages 2 | \usepackage{textpos} 3 | \setlength{\TPHorizModule}{1cm} 4 | \setlength{\TPVertModule}{1cm} 5 | 6 | \newcommand\crule[1][black]{\textcolor{#1}{\rule{2cm}{2cm}}} 7 | 8 | -------------------------------------------------------------------------------- /spatial-generalized-linear/fonts/AlegreyaSansSC-Regular.otf: -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiangyunHuang/awesome-beamers/d7c25ba67c8ed25bd927f317de4c96f223e3afb7/spatial-generalized-linear/presento.pdf -------------------------------------------------------------------------------- /spatial-generalized-linear/presento.tex: -------------------------------------------------------------------------------- 1 | % !TEX TS-program = XeLaTeX 2 | % !TEX encoding = UTF-8 Unicode 3 | \documentclass[12pt,aspectratio=43]{beamer} 4 | 5 | % Presento style file 6 | \usepackage{config/presento} 7 | \usepackage[fontset = none]{ctex} 8 | \ctexset{fontset = fandol, space = false} 9 | 10 | % custom command and packages 11 | \input{config/custom-command} 12 | 13 | % \logo{\includegraphics[height=0.09\textwidth]{images/cumtb}} 14 | 15 | % Information 16 | \title{Spatial Generalized Linear Mixed Model and Its Applications} 17 | \subtitle{毕业答辩} 18 | \author{黄湘云} 19 | \institute{中国矿业大学（北京）} 20 | \date{\today} 21 | 22 | \begin{document} 23 | 24 | % Title page 25 | \begin{frame}[plain] 26 | \maketitle 27 | \end{frame} 28 | 29 | % sections in the presentation 30 | \begin{frame}{Presento} 31 | \begin{fullpageitemize} 32 | \item \begin{center}\largetext{The design is \underline{clean}}\end{center} 33 | \item \begin{center}\largetext{The rules are \underline{simple}}\end{center} 34 | \item \begin{center}\largetext{The code is \underline{extensible}}\end{center} 35 | \end{fullpageitemize} 36 | \end{frame} 37 | 38 | \begin{frame}{Open Source Fonts} 39 | \begin{fullpageitemize} 40 | \item {\montserratfont This is Montserrat} 41 | \item {\notosansfont This is Noto Sans} 42 | \item {\latolightfont This is Lato (light)} 43 | \item {\inconsolatafont This is inconsolata} 44 | \item \textsc{This is Alegreya Sans small caps} 45 | \item $\log \{p_{ij}/(1-p_{ij})\} =\alpha + \beta'z_{ij} + U_{i} + S(x_{i})$ 46 | \end{fullpageitemize} 47 | \end{frame} 48 | 49 | \begin{frame}{Color Palette} 50 | \begin{center} 51 | \crule[colordgray] \crule[colorhgray] \crule[colorblue] \crule[colorgreen] \crule[colororange] 52 | \end{center} 53 | \end{frame} 54 | 55 | \begin{frame}[plain] 56 | \tiny 57 | \begin{equation*}\begin{cases} \frac{1}{2} \begin{cases} 2 x & \text{for}\: \frac{1}{4} \left(2 x - 2\right)^{2} < 1 \\0 & \text{for}\: \frac{4}{\left(2 x - 2\right)^{2}} < 1 \\{G_{4, 4}^{3, 1}\left(\begin{matrix} \frac{1}{2} & 1, 1, \frac{3}{2} \\\frac{1}{2}, 1, 0 & \frac{1}{2} \end{matrix} \middle| {\frac{1}{4} \operatorname{polar\_lift}^{2}{\left (- 2 x + 2 \right )}} \right)} & \text{otherwise} \end{cases} & \text{for}\: \left|{\operatorname{periodic_{argument}}{\left (\operatorname{polar\_lift}^{2}{\left (- 2 x + 2 \right )},\infty \right )}}\right| = 0 \\\int\limits_{0}^{\infty} \frac{2}{\pi t^{2}} \sin^{2}{\left (t \right )} \cos{\left (2 t \left(- x + 1\right) \right )}\, dt & \text{otherwise} \end{cases}\end{equation*} 58 | \end{frame} 59 | 60 | 61 | \framecard[colorgreen]{{\color{white}\hugetext{BIG BOLD TEXT}}} 62 | 63 | \framepic[0.8]{images/bg}{ 64 | \begin{textblock}{7}(7,2.5) 65 | {\color{colorblue}\hugetext{\textbf{RUN!}}} 66 | \end{textblock} 67 | } 68 | \end{document} --------------------------------------------------------------------------------