├── .DS_Store ├── .gitattributes ├── HiCLift ├── .DS_Store ├── __init__.py ├── chainfile.py ├── data │ └── juicer_tools_1.11.09_jcuda.0.8.jar ├── io.py ├── liftover.py └── utilities.py ├── LICENSE ├── MANIFEST.in ├── README.rst ├── chain-files └── grch38-chm13v2.chain ├── images ├── accuracy.png ├── fig1.svg.png └── running-time-and-memory.png ├── scripts ├── .DS_Store └── HiCLift └── setup.py /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/.gitattributes -------------------------------------------------------------------------------- /HiCLift/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/.DS_Store -------------------------------------------------------------------------------- /HiCLift/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/__init__.py -------------------------------------------------------------------------------- /HiCLift/chainfile.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/chainfile.py -------------------------------------------------------------------------------- /HiCLift/data/juicer_tools_1.11.09_jcuda.0.8.jar: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/data/juicer_tools_1.11.09_jcuda.0.8.jar -------------------------------------------------------------------------------- /HiCLift/io.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/io.py -------------------------------------------------------------------------------- /HiCLift/liftover.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/liftover.py -------------------------------------------------------------------------------- /HiCLift/utilities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/HiCLift/utilities.py -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include LICENSE README.rst 2 | -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/README.rst -------------------------------------------------------------------------------- /chain-files/grch38-chm13v2.chain: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/chain-files/grch38-chm13v2.chain -------------------------------------------------------------------------------- /images/accuracy.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/images/accuracy.png -------------------------------------------------------------------------------- /images/fig1.svg.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/images/fig1.svg.png -------------------------------------------------------------------------------- /images/running-time-and-memory.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/images/running-time-and-memory.png -------------------------------------------------------------------------------- /scripts/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/scripts/.DS_Store -------------------------------------------------------------------------------- /scripts/HiCLift: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/scripts/HiCLift -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/XiaoTaoWang/HiCLift/HEAD/setup.py --------------------------------------------------------------------------------