├── .gitignore ├── 2to3.sh ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── img ├── RPKM.png ├── plotwithcoor.png ├── plotwithevent.png └── plotwitheventgf.png ├── pyproject.toml ├── setup.py ├── src ├── MISO │ ├── README.md │ ├── __init__.py │ ├── misopy │ │ ├── Gene.py │ │ ├── __init__.py │ │ ├── as_events.py │ │ ├── cluster_utils.py │ │ ├── compare_miso.py │ │ ├── credible_intervals.py │ │ ├── exon_utils.py │ │ ├── filter_events.py │ │ ├── gff_utils.py │ │ ├── hypothesis_test.py │ │ ├── index_gff.py │ │ ├── json_utils.py │ │ ├── kde_subclass.py │ │ ├── legacy_test_pysplicing.py │ │ ├── misc_utils.py │ │ ├── miso.py │ │ ├── miso_db.py │ │ ├── miso_pack.py │ │ ├── miso_sampler.py │ │ ├── miso_utils.py │ │ ├── miso_zip.py │ │ ├── module_availability.py │ │ ├── parse_csv.py │ │ ├── parse_gene.py │ │ ├── pe_utils.py │ │ ├── pickle_utils.py │ │ ├── py2c_gene.py │ │ ├── read_simulator.py │ │ ├── reads_utils.py │ │ ├── run_events_analysis.py │ │ ├── run_miso.py │ │ ├── sam_rpkm.py │ │ ├── sam_to_bam.py │ │ ├── sam_utils.py │ │ ├── samples_utils.py │ │ ├── sashimi_plot │ │ │ ├── Sashimi.py │ │ │ ├── __init__.py │ │ │ ├── plot.py │ │ │ ├── plot_utils │ │ │ │ ├── .gitignore │ │ │ │ ├── __init__.py │ │ │ │ ├── plot_gene.py │ │ │ │ ├── plot_settings.py │ │ │ │ ├── plotting.py │ │ │ │ └── samples_plotter.py │ │ │ ├── sashimi_plot.py │ │ │ └── settings │ │ │ │ └── sashimi_plot_settings.txt │ │ ├── settings.py │ │ ├── settings │ │ │ └── miso_settings.txt │ │ ├── summarize_miso.py │ │ ├── test_cluster.py │ │ └── test_miso.py │ └── test.py └── rmats2sashimiplot │ ├── __init__.py │ └── rmats2sashimiplot.py └── wdl ├── README.md └── rmats2sashimiplot.wdl /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Xinglab/rmats2sashimiplot/HEAD/.gitignore -------------------------------------------------------------------------------- /2to3.sh: 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