├── .gitignore ├── LICENSE ├── README.md ├── Spot-Nuclei2 ├── README.md ├── config2.py ├── dataset.py ├── functions.py ├── mask.png ├── test │ ├── class_split.csv │ ├── eda.py │ ├── eda2.py │ ├── no_overlap_test.py │ ├── resize_test.py │ └── super_test.py ├── train_val.py ├── val_test.py ├── val_test1.py ├── val_test2.py ├── visualize2.py ├── visualize3.py ├── visualize3_test.py ├── visualize4_iou.py └── visualize4_use_semantic.py ├── assets ├── 4k_video.gif ├── detection_activations.png ├── detection_anchors.png ├── detection_final.png ├── detection_histograms.png ├── detection_masks.png ├── detection_refinement.png ├── detection_tensorboard.png ├── donuts.png ├── sheep.png └── street.png ├── coco.py ├── config.py ├── demo.ipynb ├── images ├── 1045023827_4ec3e8ba5c_z.jpg ├── 12283150_12d37e6389_z.jpg ├── 2383514521_1fc8d7b0de_z.jpg ├── 2502287818_41e4b0c4fb_z.jpg ├── 2516944023_d00345997d_z.jpg ├── 25691390_f9944f61b5_z.jpg ├── 262985539_1709e54576_z.jpg ├── 3132016470_c27baa00e8_z.jpg ├── 3627527276_6fe8cd9bfe_z.jpg ├── 3651581213_f81963d1dd_z.jpg ├── 3800883468_12af3c0b50_z.jpg ├── 3862500489_6fd195d183_z.jpg ├── 3878153025_8fde829928_z.jpg ├── 4410436637_7b0ca36ee7_z.jpg ├── 4782628554_668bc31826_z.jpg ├── 5951960966_d4e1cda5d0_z.jpg ├── 6584515005_fce9cec486_z.jpg ├── 6821351586_59aa0dc110_z.jpg ├── 7581246086_cf7bbb7255_z.jpg ├── 7933423348_c30bd9bd4e_z.jpg ├── 8053677163_d4c8f416be_z.jpg ├── 8239308689_efa6c11b08_z.jpg ├── 8433365521_9252889f9a_z.jpg ├── 8512296263_5fc5458e20_z.jpg ├── 8699757338_c3941051b6_z.jpg ├── 8734543718_37f6b8bd45_z.jpg ├── 8829708882_48f263491e_z.jpg ├── 9118579087_f9ffa19e63_z.jpg └── 9247489789_132c0d534a_z.jpg ├── inspect_data.ipynb ├── inspect_model.ipynb ├── inspect_weights.ipynb ├── model.py ├── parallel_model.py ├── shapes.py ├── train_shapes.ipynb ├── utils.py └── visualize.py /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints/ 2 | __pycache__/ 3 | mask_rcnn_coco.h5 4 | .idea/ 5 | 6 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/README.md -------------------------------------------------------------------------------- /Spot-Nuclei2/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/README.md -------------------------------------------------------------------------------- /Spot-Nuclei2/config2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/config2.py -------------------------------------------------------------------------------- /Spot-Nuclei2/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/dataset.py -------------------------------------------------------------------------------- /Spot-Nuclei2/functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/functions.py -------------------------------------------------------------------------------- /Spot-Nuclei2/mask.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/mask.png -------------------------------------------------------------------------------- /Spot-Nuclei2/test/class_split.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/class_split.csv -------------------------------------------------------------------------------- /Spot-Nuclei2/test/eda.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/eda.py -------------------------------------------------------------------------------- /Spot-Nuclei2/test/eda2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/eda2.py -------------------------------------------------------------------------------- /Spot-Nuclei2/test/no_overlap_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/no_overlap_test.py -------------------------------------------------------------------------------- /Spot-Nuclei2/test/resize_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/resize_test.py -------------------------------------------------------------------------------- /Spot-Nuclei2/test/super_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/test/super_test.py -------------------------------------------------------------------------------- /Spot-Nuclei2/train_val.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/train_val.py -------------------------------------------------------------------------------- /Spot-Nuclei2/val_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/val_test.py -------------------------------------------------------------------------------- /Spot-Nuclei2/val_test1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/val_test1.py -------------------------------------------------------------------------------- /Spot-Nuclei2/val_test2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/val_test2.py -------------------------------------------------------------------------------- /Spot-Nuclei2/visualize2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/visualize2.py -------------------------------------------------------------------------------- /Spot-Nuclei2/visualize3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/visualize3.py -------------------------------------------------------------------------------- /Spot-Nuclei2/visualize3_test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/visualize3_test.py -------------------------------------------------------------------------------- /Spot-Nuclei2/visualize4_iou.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/visualize4_iou.py -------------------------------------------------------------------------------- /Spot-Nuclei2/visualize4_use_semantic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/Spot-Nuclei2/visualize4_use_semantic.py -------------------------------------------------------------------------------- /assets/4k_video.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/4k_video.gif -------------------------------------------------------------------------------- /assets/detection_activations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_activations.png -------------------------------------------------------------------------------- /assets/detection_anchors.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_anchors.png -------------------------------------------------------------------------------- /assets/detection_final.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_final.png -------------------------------------------------------------------------------- /assets/detection_histograms.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_histograms.png -------------------------------------------------------------------------------- /assets/detection_masks.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_masks.png -------------------------------------------------------------------------------- /assets/detection_refinement.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_refinement.png -------------------------------------------------------------------------------- /assets/detection_tensorboard.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/detection_tensorboard.png -------------------------------------------------------------------------------- /assets/donuts.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/donuts.png -------------------------------------------------------------------------------- /assets/sheep.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/sheep.png -------------------------------------------------------------------------------- /assets/street.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/assets/street.png -------------------------------------------------------------------------------- /coco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/coco.py -------------------------------------------------------------------------------- /config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/config.py -------------------------------------------------------------------------------- /demo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/demo.ipynb -------------------------------------------------------------------------------- /images/1045023827_4ec3e8ba5c_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/1045023827_4ec3e8ba5c_z.jpg -------------------------------------------------------------------------------- /images/12283150_12d37e6389_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/12283150_12d37e6389_z.jpg -------------------------------------------------------------------------------- /images/2383514521_1fc8d7b0de_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/2383514521_1fc8d7b0de_z.jpg -------------------------------------------------------------------------------- /images/2502287818_41e4b0c4fb_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/2502287818_41e4b0c4fb_z.jpg -------------------------------------------------------------------------------- /images/2516944023_d00345997d_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/2516944023_d00345997d_z.jpg -------------------------------------------------------------------------------- /images/25691390_f9944f61b5_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/25691390_f9944f61b5_z.jpg -------------------------------------------------------------------------------- /images/262985539_1709e54576_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/262985539_1709e54576_z.jpg -------------------------------------------------------------------------------- /images/3132016470_c27baa00e8_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3132016470_c27baa00e8_z.jpg -------------------------------------------------------------------------------- /images/3627527276_6fe8cd9bfe_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3627527276_6fe8cd9bfe_z.jpg -------------------------------------------------------------------------------- /images/3651581213_f81963d1dd_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3651581213_f81963d1dd_z.jpg -------------------------------------------------------------------------------- /images/3800883468_12af3c0b50_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3800883468_12af3c0b50_z.jpg -------------------------------------------------------------------------------- /images/3862500489_6fd195d183_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3862500489_6fd195d183_z.jpg -------------------------------------------------------------------------------- /images/3878153025_8fde829928_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/3878153025_8fde829928_z.jpg -------------------------------------------------------------------------------- /images/4410436637_7b0ca36ee7_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/4410436637_7b0ca36ee7_z.jpg -------------------------------------------------------------------------------- /images/4782628554_668bc31826_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/4782628554_668bc31826_z.jpg -------------------------------------------------------------------------------- /images/5951960966_d4e1cda5d0_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/5951960966_d4e1cda5d0_z.jpg -------------------------------------------------------------------------------- /images/6584515005_fce9cec486_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/6584515005_fce9cec486_z.jpg -------------------------------------------------------------------------------- /images/6821351586_59aa0dc110_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/6821351586_59aa0dc110_z.jpg -------------------------------------------------------------------------------- /images/7581246086_cf7bbb7255_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/7581246086_cf7bbb7255_z.jpg -------------------------------------------------------------------------------- /images/7933423348_c30bd9bd4e_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/7933423348_c30bd9bd4e_z.jpg -------------------------------------------------------------------------------- /images/8053677163_d4c8f416be_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8053677163_d4c8f416be_z.jpg -------------------------------------------------------------------------------- /images/8239308689_efa6c11b08_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8239308689_efa6c11b08_z.jpg -------------------------------------------------------------------------------- /images/8433365521_9252889f9a_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8433365521_9252889f9a_z.jpg -------------------------------------------------------------------------------- /images/8512296263_5fc5458e20_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8512296263_5fc5458e20_z.jpg -------------------------------------------------------------------------------- /images/8699757338_c3941051b6_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8699757338_c3941051b6_z.jpg -------------------------------------------------------------------------------- /images/8734543718_37f6b8bd45_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8734543718_37f6b8bd45_z.jpg -------------------------------------------------------------------------------- /images/8829708882_48f263491e_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/8829708882_48f263491e_z.jpg -------------------------------------------------------------------------------- /images/9118579087_f9ffa19e63_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/9118579087_f9ffa19e63_z.jpg -------------------------------------------------------------------------------- /images/9247489789_132c0d534a_z.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/images/9247489789_132c0d534a_z.jpg -------------------------------------------------------------------------------- /inspect_data.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/inspect_data.ipynb -------------------------------------------------------------------------------- /inspect_model.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/inspect_model.ipynb -------------------------------------------------------------------------------- /inspect_weights.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/inspect_weights.ipynb -------------------------------------------------------------------------------- /model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/model.py -------------------------------------------------------------------------------- /parallel_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/parallel_model.py -------------------------------------------------------------------------------- /shapes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/shapes.py -------------------------------------------------------------------------------- /train_shapes.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/train_shapes.ipynb -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/utils.py -------------------------------------------------------------------------------- /visualize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YanWang2014/Mask_RCNN/HEAD/visualize.py --------------------------------------------------------------------------------