├── DESCRIPTION ├── Manual_XPASS.pdf ├── NAMESPACE ├── R ├── RcppExports.R ├── XPASS.R ├── compute_pm.R ├── conjugate_gradient.R ├── corr_ss.R └── predict_XPASS.R ├── README.md ├── inst └── extdata │ ├── EAS_fourier_ls-all.bed │ └── EUR_fourier_ls-all.bed ├── man ├── XPASS.Rd ├── evalR2_XPASS.Rd └── predict_XPASS.Rd ├── ref_cvt.pdf └── src ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── plinkfun.cpp ├── plinkfun.hpp ├── readPlink.cpp └── scaleC.cpp /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YangLabHKUST/XPASS/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /Manual_XPASS.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YangLabHKUST/XPASS/HEAD/Manual_XPASS.pdf -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | exportPattern("^[[:alpha:]]+") 2 | importFrom(Rcpp, evalCpp) 3 | useDynLib(XPASS, .registration = TRUE) 4 | -------------------------------------------------------------------------------- /R/RcppExports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YangLabHKUST/XPASS/HEAD/R/RcppExports.R -------------------------------------------------------------------------------- /R/XPASS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YangLabHKUST/XPASS/HEAD/R/XPASS.R -------------------------------------------------------------------------------- /R/compute_pm.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YangLabHKUST/XPASS/HEAD/R/compute_pm.R 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