├── .gitignore ├── LICENSE ├── README.md ├── changelog.md ├── mimic3benchmark ├── __init__.py ├── evaluation │ ├── README.md │ ├── __init__.py │ ├── evaluate_decomp.py │ ├── evaluate_ihm.py │ ├── evaluate_los.py │ └── evaluate_pheno.py ├── mimic3csv.py ├── more_on_readers.md ├── preprocessing.py ├── readers.py ├── resources │ ├── hcup_ccs_2015_definitions.yaml │ ├── itemid_to_variable_map.csv │ ├── testset.csv │ └── variable_ranges.csv ├── scripts │ ├── __init__.py │ ├── create_decompensation.py │ ├── create_in_hospital_mortality.py │ ├── create_length_of_stay.py │ ├── create_multitask.py │ ├── create_phenotyping.py │ ├── extract_episodes_from_subjects.py │ ├── extract_subjects.py │ ├── more_on_validating_events.md │ ├── split_train_and_test.py │ └── validate_events.py ├── subject.py ├── tests │ ├── README.md │ ├── __init__.py │ ├── compare_dir_with_existing.py │ ├── compare_hashes.py │ ├── compare_listfiles.py │ ├── hash_tables.py │ └── resources │ │ ├── decomp.csv │ │ ├── ihm.csv │ │ ├── los.csv │ │ ├── multitask.csv │ │ ├── pheno.csv │ │ └── root.csv └── util.py ├── mimic3models ├── __init__.py ├── common_utils.py ├── create_normalizer_state.py ├── decompensation │ ├── __init__.py │ ├── decomp_ts0.8.input_str-previous.n1e5.start_time-zero.normalizer │ ├── decomp_ts1.0.input_str-previous.n1e5.start_time-zero.normalizer │ ├── logistic │ │ ├── __init__.py │ │ └── main.py │ ├── main.py │ └── utils.py ├── feature_extractor.py ├── helpers.md ├── in_hospital_mortality │ ├── __init__.py │ ├── ihm_ts0.8.input_str-previous.start_time-zero.normalizer │ ├── ihm_ts1.0.input_str-previous.start_time-zero.normalizer │ ├── ihm_ts2.0.input_str-previous.start_time-zero.normalizer │ ├── logistic │ │ ├── __init__.py │ │ └── main.py │ ├── main.py │ └── utils.py ├── keras_models │ ├── __init__.py │ ├── channel_wise_lstms.py │ ├── lstm.py │ ├── multitask_channel_wise_lstms.py │ └── multitask_lstm.py ├── keras_utils.py ├── length_of_stay │ ├── __init__.py │ ├── logistic │ │ ├── __init__.py │ │ ├── main.py │ │ └── main_cf.py │ ├── los_ts0.8.input_str-previous.start_time-zero.n5e4.normalizer │ ├── los_ts1.0.input_str-previous.start_time-zero.n5e4.normalizer │ ├── main.py │ └── utils.py ├── metrics.py ├── multitask │ ├── __init__.py │ ├── main.py │ ├── mult_ts1.0.input_str-previous.start_time-zero.normalizer │ └── utils.py ├── parse_utils.py ├── phenotyping │ ├── __init__.py │ ├── logistic │ │ ├── __init__.py │ │ └── main.py │ ├── main.py │ ├── ph_ts0.8.input_str-previous.start_time-zero.normalizer │ ├── ph_ts1.0.input_str-previous.start_time-zero.normalizer │ └── utils.py ├── preprocessing.py ├── pretrained_models.md ├── rename_log.py ├── rerun.py ├── resources │ ├── channel_info.json │ ├── discretizer_config.json │ └── valset.csv └── split_train_val.py ├── requirements.txt └── statistics.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YerevaNN/mimic3-benchmarks/HEAD/.gitignore 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