├── Highlight.png ├── README.md ├── code ├── __pycache__ │ └── test_util.cpython-36.pyc ├── dataloaders │ ├── __pycache__ │ │ ├── la_heart.cpython-36.pyc │ │ ├── la_heart.cpython-38.pyc │ │ ├── utils.cpython-36.pyc │ │ └── utils.cpython-38.pyc │ ├── la_heart.py │ ├── la_heart_processing.py │ └── utils.py ├── networks │ ├── __pycache__ │ │ ├── vnet.cpython-36.pyc │ │ └── vnet.cpython-38.pyc │ └── vnet.py ├── segment_anything │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── automatic_mask_generator.cpython-36.pyc │ │ ├── automatic_mask_generator.cpython-38.pyc │ │ ├── build_sam.cpython-36.pyc │ │ ├── build_sam.cpython-38.pyc │ │ ├── build_sam3D.cpython-36.pyc │ │ ├── build_sam3D.cpython-38.pyc │ │ ├── predictor.cpython-36.pyc │ │ └── predictor.cpython-38.pyc │ ├── automatic_mask_generator.py │ ├── build_sam.py │ ├── build_sam3D.py │ ├── modeling │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-36.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── common.cpython-36.pyc │ │ │ ├── common.cpython-38.pyc │ │ │ ├── image_encoder.cpython-36.pyc │ │ │ ├── image_encoder.cpython-38.pyc │ │ │ ├── image_encoder3D.cpython-36.pyc │ │ │ ├── image_encoder3D.cpython-38.pyc │ │ │ ├── mask_decoder.cpython-36.pyc │ │ │ ├── mask_decoder.cpython-38.pyc │ │ │ ├── mask_decoder3D.cpython-36.pyc │ │ │ ├── mask_decoder3D.cpython-38.pyc │ │ │ ├── prompt_encoder.cpython-36.pyc │ │ │ ├── prompt_encoder.cpython-38.pyc │ │ │ ├── prompt_encoder3D.cpython-36.pyc │ │ │ ├── prompt_encoder3D.cpython-38.pyc │ │ │ ├── sam3D.cpython-36.pyc │ │ │ ├── sam3D.cpython-38.pyc │ │ │ ├── sam_model.cpython-36.pyc │ │ │ ├── sam_model.cpython-38.pyc │ │ │ ├── transformer.cpython-36.pyc │ │ │ └── transformer.cpython-38.pyc │ │ ├── common.py │ │ ├── image_encoder.py │ │ ├── image_encoder3D.py │ │ ├── mask_decoder.py │ │ ├── mask_decoder3D.py │ │ ├── prompt_encoder.py │ │ ├── prompt_encoder3D.py │ │ ├── sam.py │ │ ├── sam3D.py │ │ ├── sam_model.py │ │ └── transformer.py │ ├── predictor.py │ └── utils │ │ ├── __init__.py │ │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── amg.cpython-36.pyc │ │ ├── amg.cpython-38.pyc │ │ ├── transforms.cpython-36.pyc │ │ ├── transforms.cpython-38.pyc │ │ ├── transforms3D.cpython-36.pyc │ │ └── transforms3D.cpython-38.pyc │ │ ├── amg.py │ │ ├── onnx.py │ │ ├── transforms.py │ │ └── transforms3D.py ├── test_LA.py ├── test_util.py ├── train_LA.py ├── train_LA_semisam_mt.py └── utils │ ├── __pycache__ │ ├── click_method.cpython-36.pyc │ ├── click_method.cpython-38.pyc │ ├── data_loader.cpython-36.pyc │ ├── data_loader.cpython-38.pyc │ ├── losses.cpython-36.pyc │ ├── losses.cpython-38.pyc │ ├── ramps.cpython-36.pyc │ └── ramps.cpython-38.pyc │ ├── click_method.py │ ├── data_loader.py │ ├── data_paths.py │ ├── losses.py │ ├── ramps.py │ └── util.py ├── code_semisam+ ├── SemiSAM_train_DAN_3D.py ├── SemiSAM_train_MT_3D.py ├── SemiSAM_train_UAMT_3D.py ├── __pycache__ │ ├── semisam_plus.cpython-38.pyc │ ├── test_3D_sdf_util.cpython-38.pyc │ ├── test_3D_util.cpython-38.pyc │ ├── val_3D.cpython-38.pyc │ └── val_3D_sdf.cpython-38.pyc ├── dataloaders │ ├── __pycache__ │ │ ├── brats2019.cpython-38.pyc │ │ ├── la.cpython-38.pyc │ │ └── utils.cpython-38.pyc │ ├── acdc_data_processing.py │ ├── brats2019.py │ ├── brats_proprecessing.py │ ├── dataset.py │ ├── la.py │ └── utils.py ├── networks │ ├── VoxResNet.py │ ├── __pycache__ │ │ ├── VoxResNet.cpython-38.pyc │ │ ├── attention_unet.cpython-38.pyc │ │ ├── discriminator.cpython-38.pyc │ │ ├── grid_attention_layer.cpython-38.pyc │ │ ├── net_factory_3d.cpython-38.pyc │ │ ├── networks_other.cpython-38.pyc │ │ ├── neural_network.cpython-38.pyc │ │ ├── nnunet.cpython-38.pyc │ │ ├── unet_3D.cpython-38.pyc │ │ ├── unet_3D_sdf.cpython-38.pyc │ │ ├── utils.cpython-38.pyc │ │ └── vnet.cpython-38.pyc │ ├── attention.py │ ├── attention_unet.py │ ├── config.py │ ├── discriminator.py │ ├── efficient_encoder.py │ ├── efficientunet.py │ ├── encoder_tool.py │ ├── enet.py │ ├── grid_attention_layer.py │ ├── net_factory.py │ ├── net_factory_3d.py │ ├── networks_other.py │ ├── neural_network.py │ ├── nnunet.py │ ├── pnet.py │ ├── swin_transformer_unet_skip_expand_decoder_sys.py │ ├── unet.py │ ├── unet_3D.py │ ├── unet_3D_dv_semi.py │ ├── unet_3D_sdf.py │ ├── utils.py │ ├── vision_transformer.py │ └── vnet.py ├── segment_anything │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── automatic_mask_generator.cpython-36.pyc │ │ ├── automatic_mask_generator.cpython-38.pyc │ │ ├── build_sam.cpython-36.pyc │ │ ├── build_sam.cpython-38.pyc │ │ ├── build_sam3D.cpython-36.pyc │ │ ├── build_sam3D.cpython-38.pyc │ │ ├── predictor.cpython-36.pyc │ │ └── predictor.cpython-38.pyc │ ├── automatic_mask_generator.py │ ├── build_sam.py │ ├── build_sam3D.py │ ├── modeling │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-36.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── common.cpython-36.pyc │ │ │ ├── common.cpython-38.pyc │ │ │ ├── image_encoder.cpython-36.pyc │ │ │ ├── image_encoder.cpython-38.pyc │ │ │ ├── image_encoder3D.cpython-36.pyc │ │ │ ├── image_encoder3D.cpython-38.pyc │ │ │ ├── mask_decoder.cpython-36.pyc │ │ │ ├── mask_decoder.cpython-38.pyc │ │ │ ├── mask_decoder3D.cpython-36.pyc │ │ │ ├── mask_decoder3D.cpython-38.pyc │ │ │ ├── prompt_encoder.cpython-36.pyc │ │ │ ├── prompt_encoder.cpython-38.pyc │ │ │ ├── prompt_encoder3D.cpython-36.pyc │ │ │ ├── prompt_encoder3D.cpython-38.pyc │ │ │ ├── sam3D.cpython-36.pyc │ │ │ ├── sam3D.cpython-38.pyc │ │ │ ├── sam_model.cpython-36.pyc │ │ │ ├── sam_model.cpython-38.pyc │ │ │ ├── transformer.cpython-36.pyc │ │ │ └── transformer.cpython-38.pyc │ │ ├── common.py │ │ ├── image_encoder.py │ │ ├── image_encoder3D.py │ │ ├── mask_decoder.py │ │ ├── mask_decoder3D.py │ │ ├── prompt_encoder.py │ │ ├── prompt_encoder3D.py │ │ ├── sam.py │ │ ├── sam3D.py │ │ ├── sam_model.py │ │ └── transformer.py │ ├── predictor.py │ └── utils │ │ ├── __init__.py │ │ ├── __pycache__ │ │ ├── __init__.cpython-36.pyc │ │ ├── __init__.cpython-38.pyc │ │ ├── amg.cpython-36.pyc │ │ ├── amg.cpython-38.pyc │ │ ├── transforms.cpython-36.pyc │ │ ├── transforms.cpython-38.pyc │ │ ├── transforms3D.cpython-36.pyc │ │ └── transforms3D.cpython-38.pyc │ │ ├── amg.py │ │ ├── onnx.py │ │ ├── transforms.py │ │ └── transforms3D.py ├── semisam_plus.py ├── test_3D.py ├── test_3D_util.py ├── utils │ ├── __pycache__ │ │ ├── click_method.cpython-38.pyc │ │ ├── losses.cpython-38.pyc │ │ ├── metrics.cpython-38.pyc │ │ └── ramps.cpython-38.pyc │ ├── click_method.py │ ├── losses.py │ ├── metrics.py │ ├── ramps.py │ └── util.py └── val_3D.py ├── data ├── data_split_MedIA │ ├── BraTS │ │ ├── test.txt │ │ ├── train.txt │ │ └── val.txt │ ├── LA │ │ ├── test.txt │ │ ├── train.txt │ │ └── val.txt │ └── RAOS │ │ ├── test.txt │ │ ├── train.txt │ │ └── val.txt ├── test.list └── train.list └── trained_pth ├── 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