├── README.md ├── code ├── __pycache__ │ ├── test_3D_util.cpython-38.pyc │ ├── test_urpc_util.cpython-38.pyc │ ├── val_3D.cpython-38.pyc │ └── val_urpc_util.cpython-38.pyc ├── dataloaders │ ├── __pycache__ │ │ ├── brats2019.cpython-38.pyc │ │ └── utils.cpython-38.pyc │ ├── acdc_data_processing.py │ ├── brats2019.py │ ├── brats_proprecessing.py │ ├── dataset.py │ └── utils.py ├── networks │ ├── VoxResNet.py │ ├── __pycache__ │ │ ├── VoxResNet.cpython-38.pyc │ │ ├── attention_unet.cpython-38.pyc │ │ ├── grid_attention_layer.cpython-38.pyc │ │ ├── net_factory_3d.cpython-38.pyc │ │ ├── networks_other.cpython-38.pyc │ │ ├── unet_3D.cpython-38.pyc │ │ ├── unet_3D_dv_semi.cpython-38.pyc │ │ ├── utils.cpython-38.pyc │ │ └── vnet.cpython-38.pyc │ ├── attention.py │ ├── attention_unet.py │ ├── discriminator.py │ ├── efficient_encoder.py │ ├── efficientunet.py │ ├── encoder_tool.py │ ├── enet.py │ ├── grid_attention_layer.py │ ├── net_factory.py │ ├── net_factory_3d.py │ ├── networks_other.py │ ├── pnet.py │ ├── unet.py │ ├── unet_3D.py │ ├── unet_3D_dv_semi.py │ ├── utils.py │ └── vnet.py ├── test_3D_dt.py ├── test_3D_util.py ├── train_UGMCL_3D.py ├── utils │ ├── __pycache__ │ │ ├── losses.cpython-38.pyc │ │ ├── metrics.cpython-38.pyc │ │ ├── ramps.cpython-38.pyc │ │ └── util.cpython-38.pyc │ ├── losses.py │ ├── metrics.py │ ├── ramps.py │ └── util.py └── val_3D.py ├── data └── BraTS2019 │ ├── README.md │ ├── test.txt │ ├── train.txt │ └── val.txt └── model ├── BraTs2019_UGMCL_25 └── unet_3D_dt │ └── unet_3D_dt_best_model.pth └── BraTs2019_UGMCL_50 └── unet_3D_dt └── unet_3D_dt_best_model.pth /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/README.md -------------------------------------------------------------------------------- /code/__pycache__/test_3D_util.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/__pycache__/test_3D_util.cpython-38.pyc -------------------------------------------------------------------------------- /code/__pycache__/test_urpc_util.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/__pycache__/test_urpc_util.cpython-38.pyc -------------------------------------------------------------------------------- /code/__pycache__/val_3D.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/__pycache__/val_3D.cpython-38.pyc -------------------------------------------------------------------------------- /code/__pycache__/val_urpc_util.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/__pycache__/val_urpc_util.cpython-38.pyc -------------------------------------------------------------------------------- /code/dataloaders/__pycache__/brats2019.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/__pycache__/brats2019.cpython-38.pyc -------------------------------------------------------------------------------- /code/dataloaders/__pycache__/utils.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/__pycache__/utils.cpython-38.pyc -------------------------------------------------------------------------------- /code/dataloaders/acdc_data_processing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/acdc_data_processing.py -------------------------------------------------------------------------------- /code/dataloaders/brats2019.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/brats2019.py -------------------------------------------------------------------------------- /code/dataloaders/brats_proprecessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/brats_proprecessing.py -------------------------------------------------------------------------------- /code/dataloaders/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/dataset.py -------------------------------------------------------------------------------- /code/dataloaders/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/dataloaders/utils.py -------------------------------------------------------------------------------- /code/networks/VoxResNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/VoxResNet.py -------------------------------------------------------------------------------- /code/networks/__pycache__/VoxResNet.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/VoxResNet.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/attention_unet.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/attention_unet.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/grid_attention_layer.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/grid_attention_layer.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/net_factory_3d.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/net_factory_3d.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/networks_other.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/networks_other.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/unet_3D.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/unet_3D.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/unet_3D_dv_semi.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/unet_3D_dv_semi.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/utils.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/utils.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/__pycache__/vnet.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/__pycache__/vnet.cpython-38.pyc -------------------------------------------------------------------------------- /code/networks/attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/attention.py -------------------------------------------------------------------------------- /code/networks/attention_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/attention_unet.py -------------------------------------------------------------------------------- /code/networks/discriminator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/discriminator.py -------------------------------------------------------------------------------- /code/networks/efficient_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/efficient_encoder.py -------------------------------------------------------------------------------- /code/networks/efficientunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/efficientunet.py -------------------------------------------------------------------------------- /code/networks/encoder_tool.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/encoder_tool.py -------------------------------------------------------------------------------- /code/networks/enet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/enet.py -------------------------------------------------------------------------------- /code/networks/grid_attention_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/grid_attention_layer.py -------------------------------------------------------------------------------- /code/networks/net_factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/net_factory.py -------------------------------------------------------------------------------- /code/networks/net_factory_3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/net_factory_3d.py -------------------------------------------------------------------------------- /code/networks/networks_other.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/networks_other.py -------------------------------------------------------------------------------- /code/networks/pnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/pnet.py -------------------------------------------------------------------------------- /code/networks/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/unet.py -------------------------------------------------------------------------------- /code/networks/unet_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/unet_3D.py -------------------------------------------------------------------------------- /code/networks/unet_3D_dv_semi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/unet_3D_dv_semi.py -------------------------------------------------------------------------------- /code/networks/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/utils.py -------------------------------------------------------------------------------- /code/networks/vnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/networks/vnet.py -------------------------------------------------------------------------------- /code/test_3D_dt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/test_3D_dt.py -------------------------------------------------------------------------------- /code/test_3D_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/test_3D_util.py -------------------------------------------------------------------------------- /code/train_UGMCL_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/train_UGMCL_3D.py -------------------------------------------------------------------------------- /code/utils/__pycache__/losses.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/__pycache__/losses.cpython-38.pyc -------------------------------------------------------------------------------- /code/utils/__pycache__/metrics.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/__pycache__/metrics.cpython-38.pyc -------------------------------------------------------------------------------- /code/utils/__pycache__/ramps.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/__pycache__/ramps.cpython-38.pyc -------------------------------------------------------------------------------- /code/utils/__pycache__/util.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/__pycache__/util.cpython-38.pyc -------------------------------------------------------------------------------- /code/utils/losses.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/losses.py -------------------------------------------------------------------------------- /code/utils/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/metrics.py -------------------------------------------------------------------------------- /code/utils/ramps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/ramps.py -------------------------------------------------------------------------------- /code/utils/util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/utils/util.py -------------------------------------------------------------------------------- /code/val_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/code/val_3D.py -------------------------------------------------------------------------------- /data/BraTS2019/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/data/BraTS2019/README.md -------------------------------------------------------------------------------- /data/BraTS2019/test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/data/BraTS2019/test.txt -------------------------------------------------------------------------------- /data/BraTS2019/train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/data/BraTS2019/train.txt -------------------------------------------------------------------------------- /data/BraTS2019/val.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/data/BraTS2019/val.txt -------------------------------------------------------------------------------- /model/BraTs2019_UGMCL_25/unet_3D_dt/unet_3D_dt_best_model.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/model/BraTs2019_UGMCL_25/unet_3D_dt/unet_3D_dt_best_model.pth -------------------------------------------------------------------------------- /model/BraTs2019_UGMCL_50/unet_3D_dt/unet_3D_dt_best_model.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YichiZhang98/UG-MCL/HEAD/model/BraTs2019_UGMCL_50/unet_3D_dt/unet_3D_dt_best_model.pth --------------------------------------------------------------------------------