├── .github └── workflows │ └── test.yml ├── .gitignore ├── .readthedocs.yml ├── LICENSE ├── README.md ├── docs ├── Makefile └── source │ ├── CD4_Tutorial.ipynb │ ├── Lineage_Tutorial.ipynb │ ├── Spatial_Tutorial.ipynb │ ├── _static │ ├── corr_plot.png │ ├── module_scores.png │ └── my-styles.css │ ├── conf.py │ ├── hotspot.rst │ └── index.rst ├── hotspot ├── __init__.py ├── bernoulli_model.py ├── danb_model.py ├── hotspot.py ├── knn.py ├── local_stats.py ├── local_stats_pairs.py ├── modules.py ├── none_model.py ├── normal_model.py ├── plots.py ├── sim_data.py └── utils.py ├── pyproject.toml ├── setup.py └── tests ├── __init__.py ├── test_bernoulli.py ├── test_local_stats.py ├── test_local_stats_pairs.py └── test_validations.py /.github/workflows/test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YosefLab/Hotspot/HEAD/.github/workflows/test.yml 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