├── .gitignore ├── LICENSE ├── README.md ├── UniMiSS ├── Downstream │ ├── BCV │ │ ├── MiTnnu │ │ │ ├── __init__.py │ │ │ ├── configuration.py │ │ │ ├── network_architecture │ │ │ │ ├── MiT.py │ │ │ │ ├── MiT_encoder.py │ │ │ │ ├── __init__.py │ │ │ │ ├── neural_network.py │ │ │ │ └── utils.py │ │ │ ├── run │ │ │ │ ├── __init__.py │ │ │ │ ├── default_configuration.py │ │ │ │ └── run_training.py │ │ │ └── training │ │ │ │ ├── __init__.py │ │ │ │ ├── model_restore.py │ │ │ │ └── network_training │ │ │ │ ├── TrainerV2_BCV.py │ │ │ │ ├── __init__.py │ │ │ │ ├── network_trainer.py │ │ │ │ ├── nnUNetTrainer.py │ │ │ │ ├── nnUNetTrainerCascadeFullRes.py │ │ │ │ └── nnUNetTrainerV2_CascadeFullRes.py │ │ ├── readme.md │ │ └── setup.py │ └── RICORD │ │ ├── dataset │ │ ├── RICORD_nii │ │ │ ├── MIDRC-RICORD-1A │ │ │ │ ├── ID419639-001155_date05-14-2008_605.000000-COR-3X3-96061.nii.gz │ │ │ │ └── ID440808-000016_date11-18-2006_605.000000-THORAX-PE-ART-AXIAL-3X3-8.812.nii.gz │ │ │ └── MIDRC-RICORD-1B │ │ │ │ ├── ID419639-000824_date07-01-2002_3.000000-2.5mm-CAP-1.25mm-Neck-14456.nii.gz │ │ │ │ └── ID440808-000100_date05-31-2003_3.000000-ARTERIAL-AXIAL-THIN-14840.nii.gz │ │ ├── lists │ │ │ ├── RICORD_test.txt │ │ │ ├── RICORD_train.txt │ │ │ └── RICORD_val.txt │ │ └── mydataset3D.py │ │ ├── nets │ │ ├── MiT.py │ │ └── utils.py │ │ ├── readme.md │ │ ├── test.py │ │ └── train.py ├── README.md ├── UniMiSS.png ├── data │ ├── 2D images │ │ └── readme.md │ ├── 3D images │ │ └── readme.md │ └── extract_subvolumes.py ├── data_loader2D.py ├── data_loader3D.py ├── main.py ├── models │ ├── MiT.py │ ├── MiT_encoder.py │ └── Pacth_embeds.py ├── run.sh └── utils.py └── UniMiSSPlus ├── Downstream ├── 2D │ ├── Cls │ │ ├── dataset │ │ │ ├── CXR_Covid-19 │ │ │ │ ├── CXR_Covid-19_Challenge_test.txt │ │ │ │ └── CXR_Covid-19_Challenge_train_all.txt │ │ │ └── my_datasets.py │ │ ├── main.py │ │ ├── net │ │ │ ├── MiTPlus_encoder.py │ │ │ └── utils.py │ │ └── readme.md │ └── Seg │ │ ├── dataset │ │ ├── Test_seg.txt │ │ ├── Training_seg_all.txt │ │ └── my_datasets.py │ │ ├── main.py │ │ ├── net │ │ ├── MiTPlus.py │ │ ├── MiTPlus_encoder.py │ │ └── utils.py │ │ └── readme.md └── 3D │ ├── BCV │ ├── MiTnnu │ │ ├── __init__.py │ │ ├── configuration.py │ │ ├── network_architecture │ │ │ ├── MiTPlus.py │ │ │ ├── __init__.py │ │ │ ├── neural_network.py │ │ │ └── utils.py │ │ ├── run │ │ │ ├── __init__.py │ │ │ ├── default_configuration.py │ │ │ └── run_training.py │ │ └── training │ │ │ ├── __init__.py │ │ │ ├── model_restore.py │ │ │ └── network_training │ │ │ ├── TrainerV2_BCV.py │ │ │ ├── __init__.py │ │ │ ├── network_trainer.py │ │ │ ├── nnUNetTrainer.py │ │ │ ├── nnUNetTrainerCascadeFullRes.py │ │ │ └── nnUNetTrainerV2_CascadeFullRes.py │ ├── build │ │ └── lib │ │ │ └── MiTnnu │ │ │ ├── __init__.py │ │ │ ├── configuration.py │ │ │ ├── network_architecture │ │ │ ├── MiT+.py │ │ │ ├── __init__.py │ │ │ ├── neural_network.py │ │ │ └── utils.py │ │ │ ├── run │ │ │ ├── __init__.py │ │ │ ├── default_configuration.py │ │ │ └── run_training.py │ │ │ └── training │ │ │ ├── __init__.py │ │ │ ├── model_restore.py │ │ │ └── network_training │ │ │ ├── TrainerV2_BCV.py │ │ │ ├── __init__.py │ │ │ ├── network_trainer.py │ │ │ ├── nnUNetTrainer.py │ │ │ ├── nnUNetTrainerCascadeFullRes.py │ │ │ └── nnUNetTrainerV2_CascadeFullRes.py │ ├── dist │ │ └── MiTnnu-0.0.1-py3.7.egg │ ├── readme.md │ └── setup.py │ └── RICORD │ ├── dataset │ ├── lists │ │ ├── RICORD_test.txt │ │ ├── RICORD_train.txt │ │ └── RICORD_val.txt │ └── mydataset3D.py │ ├── nets │ ├── MiTPlus.py │ └── utils.py │ ├── readme.md │ ├── test.py │ └── train.py ├── MiTplus.py ├── README.md ├── UniMISSPlus.png ├── data ├── 2D_images_examples │ ├── 00000001_000.png │ ├── 00000001_001.png │ ├── 00000001_002.png │ ├── 00000002_000.png │ ├── 00000003_000.png │ ├── 00000003_001.png │ └── 00000003_002.png ├── 3D_subvolumes_examples │ ├── 000001_01_01_103-115_dep0.nii.gz │ ├── 000001_01_01_103-115_dep1.nii.gz │ ├── 000001_01_01_103-115_dep2.nii.gz │ ├── 000001_01_01_103-115_dep3.nii.gz │ ├── 000001_01_01_103-115_dep4.nii.gz │ ├── 000001_02_01_008-023_dep0.nii.gz │ ├── 000001_02_01_008-023_dep1.nii.gz │ ├── 000001_02_01_008-023_dep2.nii.gz │ ├── 000001_02_01_008-023_dep3.nii.gz │ ├── 000001_02_01_008-023_dep4.nii.gz │ └── 000001_02_01_008-023_dep5.nii.gz ├── extract_subvolumes.py └── listSSL.py ├── data_loader2D.py ├── data_loader3D2D.py ├── main_UniMissPlus.py ├── pycuda_drr ├── LICENSE ├── README.md ├── build │ └── lib │ │ └── pydrr │ │ ├── Detector.py │ │ ├── GeometryContext.py │ │ ├── GpuVolumeContext.py │ │ ├── Kernel.py │ │ ├── KernelManager.py │ │ ├── KernelModule.py │ │ ├── Projector.py │ │ ├── VolumeContext.py │ │ ├── __init__.py │ │ ├── autoinit.py │ │ ├── kernels │ │ └── __init__.py │ │ ├── simple │ │ └── __init__.py │ │ └── utils.py ├── drr.mhd ├── pydrr │ ├── Detector.py │ ├── GeometryContext.py │ ├── GpuVolumeContext.py │ ├── Kernel.py │ ├── KernelManager.py │ ├── KernelModule.py │ ├── Projector.py │ ├── VolumeContext.py │ ├── __init__.py │ ├── __pycache__ │ │ ├── Detector.cpython-37.pyc │ │ ├── GeometryContext.cpython-37.pyc │ │ ├── Kernel.cpython-37.pyc │ │ ├── KernelManager.cpython-37.pyc │ │ ├── KernelModule.cpython-37.pyc │ │ ├── Projector.cpython-37.pyc │ │ ├── VolumeContext.cpython-37.pyc │ │ ├── __init__.cpython-37.pyc │ │ ├── autoinit.cpython-37.pyc │ │ └── utils.cpython-37.pyc │ ├── autoinit.py │ ├── ext │ │ ├── CupyContextBridge.py │ │ └── ExampleContextBridge.py │ ├── kernels │ │ ├── __init__.py │ │ └── __pycache__ │ │ │ └── __init__.cpython-37.pyc │ ├── simple │ │ └── __init__.py │ └── utils.py ├── rendering_DL.py ├── requirements.txt └── setup.py ├── run_UniMissPlus.sh └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/README.md -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/__init__.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/configuration.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/network_architecture /MiT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/network_architecture /MiT.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/network_architecture /MiT_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/network_architecture /MiT_encoder.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/network_architecture /__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/network_architecture /__init__.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/network_architecture /neural_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/network_architecture /neural_network.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/network_architecture /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/network_architecture /utils.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/run /__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/run /__init__.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/run /default_configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/run /default_configuration.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/run /run_training.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/run /run_training.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/__init__.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/model_restore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/model_restore.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /TrainerV2_BCV.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /TrainerV2_BCV.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /__init__.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /network_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /network_trainer.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainer.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainerCascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainerCascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainerV2_CascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/MiTnnu/training/network_training /nnUNetTrainerV2_CascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/readme.md -------------------------------------------------------------------------------- /UniMiSS/Downstream/BCV/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/BCV/setup.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1A/ID419639-001155_date05-14-2008_605.000000-COR-3X3-96061.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1A/ID419639-001155_date05-14-2008_605.000000-COR-3X3-96061.nii.gz -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1A/ID440808-000016_date11-18-2006_605.000000-THORAX-PE-ART-AXIAL-3X3-8.812.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1A/ID440808-000016_date11-18-2006_605.000000-THORAX-PE-ART-AXIAL-3X3-8.812.nii.gz -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1B/ID419639-000824_date07-01-2002_3.000000-2.5mm-CAP-1.25mm-Neck-14456.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1B/ID419639-000824_date07-01-2002_3.000000-2.5mm-CAP-1.25mm-Neck-14456.nii.gz -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1B/ID440808-000100_date05-31-2003_3.000000-ARTERIAL-AXIAL-THIN-14840.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/RICORD_nii/MIDRC-RICORD-1B/ID440808-000100_date05-31-2003_3.000000-ARTERIAL-AXIAL-THIN-14840.nii.gz -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/lists/RICORD_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/lists/RICORD_test.txt -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/lists/RICORD_train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/lists/RICORD_train.txt -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/lists/RICORD_val.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/lists/RICORD_val.txt -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/dataset/mydataset3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/dataset/mydataset3D.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/nets/MiT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/nets/MiT.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/nets/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/nets/utils.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/readme.md -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/test.py -------------------------------------------------------------------------------- /UniMiSS/Downstream/RICORD/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/Downstream/RICORD/train.py -------------------------------------------------------------------------------- /UniMiSS/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/README.md -------------------------------------------------------------------------------- /UniMiSS/UniMiSS.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/UniMiSS.png -------------------------------------------------------------------------------- /UniMiSS/data/2D images/readme.md: -------------------------------------------------------------------------------- 1 | 2D images 2 | -------------------------------------------------------------------------------- /UniMiSS/data/3D images/readme.md: -------------------------------------------------------------------------------- 1 | 3D images 2 | -------------------------------------------------------------------------------- /UniMiSS/data/extract_subvolumes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/data/extract_subvolumes.py -------------------------------------------------------------------------------- /UniMiSS/data_loader2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/data_loader2D.py -------------------------------------------------------------------------------- /UniMiSS/data_loader3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/data_loader3D.py -------------------------------------------------------------------------------- /UniMiSS/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/main.py -------------------------------------------------------------------------------- /UniMiSS/models/MiT.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/models/MiT.py -------------------------------------------------------------------------------- /UniMiSS/models/MiT_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/models/MiT_encoder.py -------------------------------------------------------------------------------- /UniMiSS/models/Pacth_embeds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/models/Pacth_embeds.py -------------------------------------------------------------------------------- /UniMiSS/run.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/run.sh -------------------------------------------------------------------------------- /UniMiSS/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSS/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/dataset/CXR_Covid-19/CXR_Covid-19_Challenge_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/dataset/CXR_Covid-19/CXR_Covid-19_Challenge_test.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/dataset/CXR_Covid-19/CXR_Covid-19_Challenge_train_all.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/dataset/CXR_Covid-19/CXR_Covid-19_Challenge_train_all.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/dataset/my_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/dataset/my_datasets.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/main.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/net/MiTPlus_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/net/MiTPlus_encoder.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/net/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/net/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Cls/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Cls/readme.md -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/dataset/Test_seg.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/dataset/Test_seg.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/dataset/Training_seg_all.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/dataset/Training_seg_all.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/dataset/my_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/dataset/my_datasets.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/main.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/net/MiTPlus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/net/MiTPlus.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/net/MiTPlus_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/net/MiTPlus_encoder.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/net/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/net/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/2D/Seg/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/2D/Seg/readme.md -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/configuration.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/MiTPlus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/MiTPlus.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/neural_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/neural_network.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/network_architecture/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/default_configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/default_configuration.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/run_training.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/run/run_training.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/model_restore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/model_restore.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/TrainerV2_BCV.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/TrainerV2_BCV.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/network_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/network_trainer.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainer.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainerCascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainerCascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainerV2_CascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/MiTnnu/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/configuration.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/MiT+.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/MiT+.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/neural_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/neural_network.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/network_architecture/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/default_configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/default_configuration.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/run_training.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/run/run_training.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/model_restore.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/model_restore.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/TrainerV2_BCV.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/TrainerV2_BCV.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/network_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/network_trainer.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainer.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainerCascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainerCascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainerV2_CascadeFullRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/build/lib/MiTnnu/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/dist/MiTnnu-0.0.1-py3.7.egg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/dist/MiTnnu-0.0.1-py3.7.egg -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/readme.md -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/BCV/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/BCV/setup.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_test.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_train.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_train.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_val.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/dataset/lists/RICORD_val.txt -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/dataset/mydataset3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/dataset/mydataset3D.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/nets/MiTPlus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/nets/MiTPlus.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/nets/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/nets/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/readme.md -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/test.py -------------------------------------------------------------------------------- /UniMiSSPlus/Downstream/3D/RICORD/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/Downstream/3D/RICORD/train.py -------------------------------------------------------------------------------- /UniMiSSPlus/MiTplus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/MiTplus.py -------------------------------------------------------------------------------- /UniMiSSPlus/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/README.md -------------------------------------------------------------------------------- /UniMiSSPlus/UniMISSPlus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/UniMISSPlus.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000001_000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000001_000.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000001_001.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000001_001.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000001_002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000001_002.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000002_000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000002_000.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000003_000.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000003_000.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000003_001.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000003_001.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/2D_images_examples/00000003_002.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/2D_images_examples/00000003_002.png -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep0.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep0.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep1.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep1.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep2.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep2.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep3.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep3.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep4.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_01_01_103-115_dep4.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep0.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep0.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep1.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep1.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep2.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep2.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep3.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep3.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep4.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep4.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep5.nii.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/3D_subvolumes_examples/000001_02_01_008-023_dep5.nii.gz -------------------------------------------------------------------------------- /UniMiSSPlus/data/extract_subvolumes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/extract_subvolumes.py -------------------------------------------------------------------------------- /UniMiSSPlus/data/listSSL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data/listSSL.py -------------------------------------------------------------------------------- /UniMiSSPlus/data_loader2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data_loader2D.py -------------------------------------------------------------------------------- /UniMiSSPlus/data_loader3D2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/data_loader3D2D.py -------------------------------------------------------------------------------- /UniMiSSPlus/main_UniMissPlus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/main_UniMissPlus.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/LICENSE -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/README.md -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/Detector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/Detector.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/GeometryContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/GeometryContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/GpuVolumeContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/GpuVolumeContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/Kernel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/Kernel.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/KernelManager.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/KernelManager.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/KernelModule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/KernelModule.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/Projector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/Projector.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/VolumeContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/VolumeContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/autoinit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/autoinit.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/kernels/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/kernels/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/simple/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/simple/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/build/lib/pydrr/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/build/lib/pydrr/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/drr.mhd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/drr.mhd -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/Detector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/Detector.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/GeometryContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/GeometryContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/GpuVolumeContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/GpuVolumeContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/Kernel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/Kernel.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/KernelManager.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/KernelManager.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/KernelModule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/KernelModule.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/Projector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/Projector.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/VolumeContext.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/VolumeContext.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Detector.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Detector.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/GeometryContext.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/GeometryContext.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Kernel.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Kernel.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/KernelManager.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/KernelManager.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/KernelModule.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/KernelModule.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Projector.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/Projector.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/VolumeContext.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/VolumeContext.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/autoinit.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/autoinit.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/__pycache__/utils.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/__pycache__/utils.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/autoinit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/autoinit.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/ext/CupyContextBridge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/ext/CupyContextBridge.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/ext/ExampleContextBridge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/ext/ExampleContextBridge.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/kernels/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/kernels/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/kernels/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/kernels/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/simple/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/simple/__init__.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/pydrr/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/pydrr/utils.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/rendering_DL.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/rendering_DL.py -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/requirements.txt -------------------------------------------------------------------------------- /UniMiSSPlus/pycuda_drr/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/pycuda_drr/setup.py -------------------------------------------------------------------------------- /UniMiSSPlus/run_UniMissPlus.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/run_UniMissPlus.sh -------------------------------------------------------------------------------- /UniMiSSPlus/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/YtongXie/UniMiSS-code/HEAD/UniMiSSPlus/utils.py --------------------------------------------------------------------------------