├── .github └── workflows │ └── python-package.yml ├── .gitignore ├── .pylintrc ├── Makefile ├── README.md ├── _config.yml ├── citation.cff ├── docs ├── CNAME ├── build_graph.png ├── contributing.md ├── convert.html ├── github.css ├── helpers.html ├── html.mako ├── index.html ├── logo_vflow_straight.png ├── notebooks │ ├── 00_synthetic_classification.html │ ├── 01_enhancer.html │ ├── 01_enhancer_rush.html │ ├── 02_fmri.html │ ├── 03_computer_vision_dnn.html │ └── 04_feat_importance_stability.html ├── paper │ ├── compile_paper.sh │ ├── paper.md │ ├── paper.pdf │ └── references.bib ├── perturb_stats.png ├── pipeline.html ├── style_docs.py ├── subkey.html ├── utils.html ├── vflow-internals.html ├── vfunc.html ├── vset.html └── wave.css ├── hatch.toml ├── license.md ├── notebooks ├── 00_synthetic_classification.ipynb ├── 01_enhancer.ipynb ├── 02_fmri.ipynb ├── 03_computer_vision_dnn.ipynb ├── 04_feat_importance_stability.ipynb ├── computational │ ├── 00_mlflow_tracking.ipynb │ └── 01_ray_async.ipynb ├── data │ ├── enhancer │ │ ├── 01_X_train.csv │ │ ├── 02_X_test.csv │ │ ├── 03_y_train.csv │ │ └── 04_y_test.csv │ └── fmri │ │ ├── fit_feat.npy │ │ └── resp_dat.npy └── experimental │ ├── 01_enhancer_experimental.ipynb │ ├── build_Vset.ipynb │ ├── caching.ipynb │ ├── impute-predict-screen.ipynb │ ├── lazy_eval.ipynb │ └── p_check.ipynb ├── pyproject.toml ├── requirements.txt ├── tests ├── __init__.py ├── test_basic.py ├── test_helpers.py ├── test_pipelines.py └── test_utils.py └── vflow ├── __init__.py ├── helpers.py ├── pipeline.py ├── subkey.py ├── utils.py ├── vfunc.py └── vset.py /.github/workflows/python-package.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Yu-Group/veridical-flow/HEAD/.github/workflows/python-package.yml -------------------------------------------------------------------------------- /.gitignore: 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