├── .gitignore ├── Basic modeling └── Introduction │ ├── README.md │ ├── introduction.jpg │ ├── introduction.m │ ├── yeast-GEM.mat │ └── yeast-GEM.xml ├── LICENSE ├── Model applications ├── Cell factory design │ ├── README.md │ ├── iMM904.xml │ └── knockout_prediction.m ├── Flux estimation │ ├── README.md │ ├── data_bc_chemostat.xlsx │ ├── flux_estimation.m │ └── iBag597.mat └── Pathway comparison │ ├── README.md │ ├── pathway_comparison.m │ └── yeast_7.6_COBRA.xml ├── README.md └── startme.m /.gitignore: -------------------------------------------------------------------------------- 1 | 2 | .DS_Store 3 | -------------------------------------------------------------------------------- /Basic modeling/Introduction/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Yu-sysbio/Tutorials-of-metabolic-modeling/HEAD/Basic modeling/Introduction/README.md 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