├── .gitignore ├── 01-semantic-similarity.qmd ├── 011-GOSemSim.qmd ├── 012-DOSE-semantic-similarity.qmd ├── 013-meshes-semantic-similarity.qmd ├── 02-Enrichment.qmd ├── 021-go.qmd ├── 022-kegg.qmd ├── 023-wikipathways.qmd ├── 024-reactome.qmd ├── 025-do-enrichment.qmd ├── 026-meshes-enrichment.qmd ├── 027-universal-enrichment.qmd ├── 028-chipseeker.qmd ├── 029-compareCluster.qmd ├── COVID19_GeneSets.gmt ├── FAQ.qmd ├── Makefile ├── _common.R ├── _quarto.yml ├── appendix.qmd ├── cache ├── enrichMeSH.rds ├── gseMeSH.rds └── hsamd.rds ├── clusterProfiler-diagram.R ├── datasets ├── Cell_marker_Human.xlsx └── readme.md ├── dplyr.qmd ├── enrichplot.qmd ├── figures ├── Gmt_format_snapshot.gif ├── browseKEGG.png ├── clusterProfiler-diagram.png ├── cnetplot.png ├── enrichMap.png └── hsa04110_pathview.png ├── index.qmd ├── misc.qmd ├── references.bib ├── todo.md └── utilities.qmd /.gitignore: -------------------------------------------------------------------------------- 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