├── .gitignore ├── .ipynb_checkpoints └── Plot_results-checkpoint.ipynb ├── AR_sim.m ├── CalMotionArtifact.m ├── Characterize_noise.m ├── Downsample.m ├── New Microsoft Excel Worksheet.xlsx ├── Plot_Results.m ├── Plot_Results_New.m ├── Plot_loss.m ├── Plot_test_data.m ├── Process_real_data.m ├── Process_test_data.m ├── README.md ├── Reply_to_reviewers.m ├── Sensitivity_analysis.m ├── SimulateMotionArtifacts.m ├── SimulateRestingData.m ├── computation_time.m ├── count_MA.m ├── define_constants.m ├── fNIRS_denoise_pytorch_2.py ├── fNIRS_denoise_pytorch_3.py ├── fNIRS_denoise_pytorch_time.py ├── history ├── leave 1 out │ └── 8layers ├── leave 2 out │ └── 8layers ├── leave 3 out │ └── 8layers └── leave 4 out │ └── 8layers ├── main.m ├── make_HRFs.m ├── make_mse_table.m ├── plot_example.m ├── plot_real_data.m ├── plot_residual_act.m ├── plot_sens.m ├── plot_sim_data.m ├── proc_Cbsi.m ├── proc_Kalman.m ├── proc_PCA.m ├── proc_Spline.m ├── proc_Wavelet.m ├── proc_wo_crct.m └── testing.m 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