├── ACTINN ├── ACTINN.sh ├── ACTINN_res_human.rds ├── ACTINN_res_mouse.rds └── pre-process.R ├── CHETAH ├── CHETAH.R ├── CHETAH_res_human.rds └── CHETAH_res_mouse.rds ├── CellAssign ├── CellAssign.R ├── CellAssign_res_human.rds ├── CellAssign_res_mouse.rds └── marker_file_making.R ├── Garnett ├── Garnett.R ├── Garnett_res_human.rds ├── Garnett_res_mouse.rds ├── cds_object_making.R └── marker_file_making.R ├── LICENSE ├── README.md ├── SCINA ├── SCINA.R ├── SCINA_res_human.rds └── SCINA_res_mouse.rds ├── SVM ├── SVM.py ├── SVM_res_human.rds └── SVM_res_mouse.rds ├── SingleR ├── SingleR.R ├── SingleR_res_human.rds └── SingleR_res_mouse.rds ├── scDeepSort ├── scDeepSort_res_human.rds └── scDeepSort_res_mouse.rds ├── scID ├── scID.R ├── scID_res_human.rds └── scID_res_mouse.rds ├── scMap ├── scMap.R ├── scmap_cell_res_human.rds ├── scmap_cell_res_mouse.rds ├── scmap_cluster_res_human.rds └── scmap_cluster_res_mouse.rds ├── scPred ├── scPred.R ├── scPred_res_human.rds └── scPred_res_mouse.rds └── singleCellNet ├── singleCellNet.R ├── singleCellNet_res_human.rds └── singleCellNet_res_mouse.rds /ACTINN/ACTINN.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/ACTINN/ACTINN.sh -------------------------------------------------------------------------------- /ACTINN/ACTINN_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/ACTINN/ACTINN_res_human.rds -------------------------------------------------------------------------------- /ACTINN/ACTINN_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/ACTINN/ACTINN_res_mouse.rds -------------------------------------------------------------------------------- /ACTINN/pre-process.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/ACTINN/pre-process.R -------------------------------------------------------------------------------- /CHETAH/CHETAH.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CHETAH/CHETAH.R -------------------------------------------------------------------------------- /CHETAH/CHETAH_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CHETAH/CHETAH_res_human.rds -------------------------------------------------------------------------------- /CHETAH/CHETAH_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CHETAH/CHETAH_res_mouse.rds -------------------------------------------------------------------------------- /CellAssign/CellAssign.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CellAssign/CellAssign.R -------------------------------------------------------------------------------- /CellAssign/CellAssign_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CellAssign/CellAssign_res_human.rds -------------------------------------------------------------------------------- /CellAssign/CellAssign_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CellAssign/CellAssign_res_mouse.rds -------------------------------------------------------------------------------- /CellAssign/marker_file_making.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/CellAssign/marker_file_making.R -------------------------------------------------------------------------------- /Garnett/Garnett.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/Garnett/Garnett.R -------------------------------------------------------------------------------- /Garnett/Garnett_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/Garnett/Garnett_res_human.rds -------------------------------------------------------------------------------- /Garnett/Garnett_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/Garnett/Garnett_res_mouse.rds -------------------------------------------------------------------------------- /Garnett/cds_object_making.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/Garnett/cds_object_making.R -------------------------------------------------------------------------------- /Garnett/marker_file_making.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/Garnett/marker_file_making.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/README.md -------------------------------------------------------------------------------- /SCINA/SCINA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SCINA/SCINA.R -------------------------------------------------------------------------------- /SCINA/SCINA_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SCINA/SCINA_res_human.rds -------------------------------------------------------------------------------- /SCINA/SCINA_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SCINA/SCINA_res_mouse.rds -------------------------------------------------------------------------------- /SVM/SVM.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SVM/SVM.py -------------------------------------------------------------------------------- /SVM/SVM_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SVM/SVM_res_human.rds -------------------------------------------------------------------------------- /SVM/SVM_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SVM/SVM_res_mouse.rds -------------------------------------------------------------------------------- /SingleR/SingleR.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SingleR/SingleR.R -------------------------------------------------------------------------------- /SingleR/SingleR_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SingleR/SingleR_res_human.rds -------------------------------------------------------------------------------- /SingleR/SingleR_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/SingleR/SingleR_res_mouse.rds -------------------------------------------------------------------------------- /scDeepSort/scDeepSort_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scDeepSort/scDeepSort_res_human.rds -------------------------------------------------------------------------------- /scDeepSort/scDeepSort_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scDeepSort/scDeepSort_res_mouse.rds -------------------------------------------------------------------------------- /scID/scID.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scID/scID.R -------------------------------------------------------------------------------- /scID/scID_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scID/scID_res_human.rds -------------------------------------------------------------------------------- /scID/scID_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scID/scID_res_mouse.rds -------------------------------------------------------------------------------- /scMap/scMap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scMap/scMap.R -------------------------------------------------------------------------------- /scMap/scmap_cell_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scMap/scmap_cell_res_human.rds -------------------------------------------------------------------------------- /scMap/scmap_cell_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scMap/scmap_cell_res_mouse.rds -------------------------------------------------------------------------------- /scMap/scmap_cluster_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scMap/scmap_cluster_res_human.rds -------------------------------------------------------------------------------- /scMap/scmap_cluster_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scMap/scmap_cluster_res_mouse.rds -------------------------------------------------------------------------------- /scPred/scPred.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scPred/scPred.R -------------------------------------------------------------------------------- /scPred/scPred_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scPred/scPred_res_human.rds -------------------------------------------------------------------------------- /scPred/scPred_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/scPred/scPred_res_mouse.rds -------------------------------------------------------------------------------- /singleCellNet/singleCellNet.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/singleCellNet/singleCellNet.R -------------------------------------------------------------------------------- /singleCellNet/singleCellNet_res_human.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/singleCellNet/singleCellNet_res_human.rds -------------------------------------------------------------------------------- /singleCellNet/singleCellNet_res_mouse.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZJUFanLab/scDeepSort_performance_comparison/HEAD/singleCellNet/singleCellNet_res_mouse.rds --------------------------------------------------------------------------------