├── Coverage_get.py ├── Extract_Seq.py ├── README.md ├── code └── test ├── example file ├── S0028.PCycDB.blastp ├── S0028.TPM.txt ├── S0028ORF2Pgene.txt ├── merge_metaphlan_tables.py ├── quant.sf └── readme.txt ├── filter_Generate_ORF2gene.py ├── pafAORF.list └── pafAORF.nuc.fa /Coverage_get.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/Coverage_get.py -------------------------------------------------------------------------------- /Extract_Seq.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/Extract_Seq.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/README.md -------------------------------------------------------------------------------- /code/test: -------------------------------------------------------------------------------- 1 | test 2 | -------------------------------------------------------------------------------- /example file/S0028.PCycDB.blastp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/S0028.PCycDB.blastp -------------------------------------------------------------------------------- /example file/S0028.TPM.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/S0028.TPM.txt -------------------------------------------------------------------------------- /example file/S0028ORF2Pgene.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/S0028ORF2Pgene.txt -------------------------------------------------------------------------------- /example file/merge_metaphlan_tables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/merge_metaphlan_tables.py -------------------------------------------------------------------------------- /example file/quant.sf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/quant.sf -------------------------------------------------------------------------------- /example file/readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/example file/readme.txt -------------------------------------------------------------------------------- /filter_Generate_ORF2gene.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/filter_Generate_ORF2gene.py -------------------------------------------------------------------------------- /pafAORF.list: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/pafAORF.list -------------------------------------------------------------------------------- /pafAORF.nuc.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZengJiaxiong/Phosphorus-cycling-database/HEAD/pafAORF.nuc.fa --------------------------------------------------------------------------------