├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _images │ ├── jlab.png │ └── tree.png ├── _logo │ ├── banner.png │ ├── banner.svg │ ├── logo-02.svg │ ├── logo-2.png │ ├── logo-2.svg │ └── logo.svg ├── _pages │ ├── add-format.rst │ ├── cookbook.rst │ ├── dataframe.rst │ └── formats.rst ├── conf.py ├── index.rst └── make.bat ├── examples ├── PF08793_seed.clustal ├── PF08793_seed.fasta ├── PF08793_seed.newick ├── PF08793_seed.phylip └── intro-notebook.ipynb ├── phylopandas ├── __init__.py ├── __version__.py ├── core.py ├── seqio │ ├── __init__.py │ ├── read.py │ └── write.py ├── tests │ ├── __init__.py │ ├── dat │ │ ├── PF08793_seed.clustal │ │ ├── PF08793_seed.fasta │ │ └── PF08793_seed.phylip │ ├── test_frame.py │ └── test_series.py ├── treeio │ ├── __init__.py │ ├── read.py │ ├── tests │ │ ├── __init__.py │ │ └── test_read.py │ └── write.py └── utils.py ├── requirements.txt ├── setup.cfg └── setup.py /.gitignore: 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