├── INSTALL ├── InferenceScripts ├── annotateVariants.py ├── annotateVariants_GRCh38.py ├── groomAnnovarOutput.py ├── groomAnnovarOutput_GRCh38.py ├── rankVariants.py ├── rankVariantsLite.py ├── rankVariantsLite_GRCh38.py ├── rankVariants_GRCh38.py ├── runLiteModel.py ├── runLiteModel_GRCh38.py ├── runMaverick.sh ├── runMaverickLite.sh ├── runModels.py ├── runModels_GRCh38.py ├── scoreVariants.sh ├── scoreVariantsLite.sh ├── scoreVariantsLite_GRCh38.sh └── scoreVariants_GRCh38.sh ├── LICENSE.md ├── Notebooks ├── CreateTrainingAndTestSets.ipynb ├── MaverickInference.ipynb └── TrainMaverick.ipynb ├── README.md └── example ├── example.MaverickResults.txt ├── example.finalScores.txt └── example.vcf /INSTALL: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ZuchnerLab/Maverick/HEAD/INSTALL -------------------------------------------------------------------------------- /InferenceScripts/annotateVariants.py: 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