├── README.md ├── connect_loss.py ├── data_loader ├── GetDataset_CHASE.py ├── GetDataset_ISIC2018.py ├── GetDataset_Retouch.py ├── __pycache__ │ ├── GetDataset_CHASE.cpython-36.pyc │ └── GetDataset_ISIC2018.cpython-36.pyc ├── isic_datalist │ ├── folder1 │ │ ├── folder1_test.list │ │ ├── folder1_train.list │ │ └── folder1_validation.list │ ├── folder2 │ │ ├── folder2_test.list │ │ ├── folder2_train.list │ │ └── folder2_validation.list │ ├── folder3 │ │ ├── folder3_test.list │ │ ├── folder3_train.list │ │ └── folder3_validation.list │ ├── folder4 │ │ ├── folder4_test.list │ │ ├── folder4_train.list │ │ └── folder4_validation.list │ └── folder5 │ │ ├── folder5_test.list │ │ ├── folder5_train.list │ │ └── folder5_validation.list ├── retouch_weights │ ├── Cirrus │ │ ├── training_positive_pixel_1.npy │ │ ├── training_positive_pixel_2.npy │ │ └── training_positive_pixel_3.npy │ ├── Spectrailis │ │ ├── training_positive_pixel_1.npy │ │ ├── training_positive_pixel_2.npy │ │ └── training_positive_pixel_3.npy │ └── Topcon │ │ ├── training_positive_pixel_1.npy │ │ ├── training_positive_pixel_2.npy │ │ └── training_positive_pixel_3.npy └── transform.py ├── lr_update.py ├── metrics ├── __pycache__ │ └── cldice.cpython-36.pyc ├── betti_compute.py ├── cal_betti.py ├── cldice.py └── ext_libs │ ├── Gudhi.py │ ├── Gudhi.pyc │ ├── __init__.py │ ├── __init__.pyc │ ├── __pycache__ │ ├── Gudhi.cpython-36.pyc │ ├── Gudhi.cpython-37.pyc │ ├── __init__.cpython-36.pyc │ └── __init__.cpython-37.pyc │ ├── histomicsTK.py │ └── histomicsTK.pyc ├── model ├── DconnNet.py ├── __pycache__ │ ├── BaseNet.cpython-36.pyc │ ├── DconnNet.cpython-36.pyc │ ├── attention.cpython-36.pyc │ ├── resnet.cpython-36.pyc │ └── unet.cpython-36.pyc ├── attention.py ├── gap.py └── resnet.py ├── scripts ├── chasedb1_train.sh ├── retouch_cir.sh ├── retouch_spe.sh └── retouch_top.sh ├── solver.py └── train.py /README.md: -------------------------------------------------------------------------------- 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