├── .gitattributes ├── .github └── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── .gitignore ├── .travis.yml ├── .versipy ├── README.md ├── __init__.py ├── index.md ├── meta.yaml ├── mkdocs.yml └── setup.py ├── CHANGELOG.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── deploy_anaconda.sh ├── docs ├── Barcode_split │ ├── API_usage.ipynb │ ├── CLI_usage.ipynb │ ├── data │ │ ├── Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz │ │ ├── Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz │ │ └── Guppy-basecall-1D-DNA_sequencing_summary.txt.gz │ ├── results │ │ ├── sequencing_summary_1.txt │ │ ├── sequencing_summary_2.txt │ │ ├── sequencing_summary_3.txt │ │ ├── sequencing_summary_4.txt │ │ ├── sequencing_summary_5.txt │ │ ├── sequencing_summary_6.txt │ │ ├── sequencing_summary_7.txt │ │ ├── sequencing_summary_8.txt │ │ ├── sequencing_summary_barcode09.txt │ │ ├── sequencing_summary_barcode10.txt │ │ ├── sequencing_summary_barcode11.txt │ │ ├── sequencing_summary_barcode12.txt │ │ └── sequencing_summary_unclassified.txt │ └── usage.md ├── Fast5_to_seq_summary │ ├── API_usage.ipynb │ ├── CLI_usage.ipynb │ ├── data │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_103_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_108_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_113_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_121_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_150_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_191_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_192_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_224_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_237_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_243_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_290_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_301_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_318_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_319_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_343_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_348_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_354_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_36_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_382_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_38_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_410_strand.fast5 │ │ ├── 20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_418_strand.fast5 │ │ └── summary_sequencing.tsv │ ├── results │ │ ├── custom_summary_sequencing.tsv │ │ ├── fn_summary_sequencing.tsv │ │ └── summary_sequencing.tsv │ └── usage.md ├── acknowledgements.md ├── alternative.md ├── changelog.md ├── citing.md ├── code_of_conduct.md ├── contributing.md ├── index.md ├── installation.md ├── licence.md ├── pictures │ ├── Download_plot_as_png.png │ ├── align_len_1D.gif │ ├── align_score_1D.gif │ ├── align_score_len_2D.gif │ ├── alignment_coverage.gif │ ├── alignment_rate.gif │ ├── alignment_summary.gif │ ├── barcode_counts.gif │ ├── channels_activity.gif │ ├── edit_in_chart_studio.png │ ├── language-Python3-brightgreen.png │ ├── language-Python3-brightgreen.svg │ ├── len_over_time.gif │ ├── output_over_time.gif │ ├── pycoQC_long.png │ ├── pycoQC_long.svg │ ├── pycoQC_short.png │ ├── pycoQC_short.svg │ ├── qual_over_time.gif │ ├── reads_len_1D.gif │ ├── reads_qual_1D.gif │ ├── reads_qual_len_2D.gif │ └── summary.gif └── pycoQC │ ├── API_usage.ipynb │ ├── CLI_usage.ipynb │ ├── data │ ├── Albacore-1.2.1_basecall-1D-DNA_sequencing_summary.txt.gz │ ├── Albacore-1.2.3_basecall-1D-RNA_sequencing_summary.txt.gz │ ├── Albacore-1.7.0_basecall-1D-DNA_sequencing_summary.txt.gz │ ├── Albacore-2.1.10_basecall-1D-DNA_sequencing_summary.txt.gz │ ├── Albacore-2.1.10_basecall-1D-RNA_sequencing_summary.txt.gz │ ├── Albacore-2.3.1_basecall-1D-RNA_sequencing_summary.txt.gz │ ├── Guppy-2.1.3_basecall-1D-DNA_sequencing_summary.txt.gz │ ├── Guppy-2.1.3_basecall-1D-RNA_sequencing_summary.txt.gz │ ├── Guppy-2.1.3_basecall-1D_DNA_barcoding_summary.txt.gz │ ├── Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz │ ├── Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz │ ├── Guppy-basecall-1D-DNA_sequencing_summary.txt.gz │ └── pycoQC_config.json │ ├── results │ ├── Albacore-1.2.1_basecall-1D-DNA.html │ ├── Albacore-1.7.0_basecall-1D-DNA.html │ ├── Albacore-1.7.0_basecall-1D-DNA_API.html │ ├── Albacore-1.7.0_basecall-1D-DNA_API.json │ ├── Albacore-2.1.10_basecall-1D-DNA.html │ ├── Albacore_all_RNA.html │ ├── Guppy-2.1.3_basecall-1D_DNA_barcode.html │ ├── Guppy-2.1.3_basecall-1D_RNA.html │ ├── Guppy-2.1.3_basecall-1D_RNA.json │ ├── Guppy-2.3_basecall-1D_alignment-DNA.html │ └── Guppy-2.3_basecall-1D_alignment-DNA.json │ ├── results2 │ └── Albacore-1.7.0_basecall-1D-DNA_API.html │ ├── results3 │ └── Albacore-1.7.0_basecall-1D-DNA_API.json │ └── usage.md ├── meta.yaml ├── mkdocs.yml ├── paper ├── codemeta.json ├── paper.bib ├── paper.md └── pictures │ ├── channels_activity.png │ ├── output_over_time.png │ ├── reads_qual_len_2D_example.png │ └── summary.png ├── pycoQC ├── Barcode_split.py ├── Fast5_to_seq_summary.py ├── __init__.py ├── __main__.py ├── common.py ├── pycoQC.py ├── pycoQC_parse.py ├── pycoQC_plot.py ├── pycoQC_report.py └── templates │ ├── pycoQC_config.json │ └── spectre.html.j2 ├── setup.py ├── versipy.yaml └── versipy_history.txt /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.travis.yml -------------------------------------------------------------------------------- /.versipy/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/README.md -------------------------------------------------------------------------------- /.versipy/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/__init__.py -------------------------------------------------------------------------------- /.versipy/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/index.md -------------------------------------------------------------------------------- /.versipy/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/meta.yaml -------------------------------------------------------------------------------- /.versipy/mkdocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/mkdocs.yml -------------------------------------------------------------------------------- /.versipy/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/.versipy/setup.py -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/README.md -------------------------------------------------------------------------------- /deploy_anaconda.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/deploy_anaconda.sh -------------------------------------------------------------------------------- /docs/Barcode_split/API_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/API_usage.ipynb -------------------------------------------------------------------------------- /docs/Barcode_split/CLI_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/CLI_usage.ipynb -------------------------------------------------------------------------------- /docs/Barcode_split/data/Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/data/Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz -------------------------------------------------------------------------------- /docs/Barcode_split/data/Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/data/Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz -------------------------------------------------------------------------------- /docs/Barcode_split/data/Guppy-basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/data/Guppy-basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_1.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_2.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_3.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_3.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_4.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_4.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_5.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_5.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_6.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_6.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_7.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_7.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_8.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_8.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_barcode09.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_barcode09.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_barcode10.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_barcode10.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_barcode11.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_barcode11.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_barcode12.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_barcode12.txt -------------------------------------------------------------------------------- /docs/Barcode_split/results/sequencing_summary_unclassified.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/results/sequencing_summary_unclassified.txt -------------------------------------------------------------------------------- /docs/Barcode_split/usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Barcode_split/usage.md -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/API_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/API_usage.ipynb -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/CLI_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/CLI_usage.ipynb -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_103_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_103_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_108_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_108_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_113_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_113_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_121_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_121_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_150_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_150_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_191_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_191_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_192_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_192_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_224_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_224_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_237_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_237_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_243_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_243_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_290_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_290_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_301_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_301_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_318_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_318_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_319_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_319_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_343_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_343_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_348_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_348_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_354_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_354_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_36_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_36_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_382_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_382_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_38_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_38_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_410_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_410_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_418_strand.fast5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_418_strand.fast5 -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/data/summary_sequencing.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/data/summary_sequencing.tsv -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/results/custom_summary_sequencing.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/results/custom_summary_sequencing.tsv -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/results/fn_summary_sequencing.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/results/fn_summary_sequencing.tsv -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/results/summary_sequencing.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/results/summary_sequencing.tsv -------------------------------------------------------------------------------- /docs/Fast5_to_seq_summary/usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/Fast5_to_seq_summary/usage.md -------------------------------------------------------------------------------- /docs/acknowledgements.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/acknowledgements.md -------------------------------------------------------------------------------- /docs/alternative.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/alternative.md -------------------------------------------------------------------------------- /docs/changelog.md: -------------------------------------------------------------------------------- 1 | ../CHANGELOG.md -------------------------------------------------------------------------------- /docs/citing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/citing.md -------------------------------------------------------------------------------- /docs/code_of_conduct.md: -------------------------------------------------------------------------------- 1 | ../CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /docs/contributing.md: -------------------------------------------------------------------------------- 1 | ../CONTRIBUTING.md -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/index.md -------------------------------------------------------------------------------- /docs/installation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/installation.md -------------------------------------------------------------------------------- /docs/licence.md: -------------------------------------------------------------------------------- 1 | ../LICENSE -------------------------------------------------------------------------------- /docs/pictures/Download_plot_as_png.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/Download_plot_as_png.png -------------------------------------------------------------------------------- /docs/pictures/align_len_1D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/align_len_1D.gif -------------------------------------------------------------------------------- /docs/pictures/align_score_1D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/align_score_1D.gif -------------------------------------------------------------------------------- /docs/pictures/align_score_len_2D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/align_score_len_2D.gif -------------------------------------------------------------------------------- /docs/pictures/alignment_coverage.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/alignment_coverage.gif -------------------------------------------------------------------------------- /docs/pictures/alignment_rate.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/alignment_rate.gif -------------------------------------------------------------------------------- /docs/pictures/alignment_summary.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/alignment_summary.gif -------------------------------------------------------------------------------- /docs/pictures/barcode_counts.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/barcode_counts.gif -------------------------------------------------------------------------------- /docs/pictures/channels_activity.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/channels_activity.gif -------------------------------------------------------------------------------- /docs/pictures/edit_in_chart_studio.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/edit_in_chart_studio.png -------------------------------------------------------------------------------- /docs/pictures/language-Python3-brightgreen.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/language-Python3-brightgreen.png -------------------------------------------------------------------------------- /docs/pictures/language-Python3-brightgreen.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/language-Python3-brightgreen.svg -------------------------------------------------------------------------------- /docs/pictures/len_over_time.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/len_over_time.gif -------------------------------------------------------------------------------- /docs/pictures/output_over_time.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/output_over_time.gif -------------------------------------------------------------------------------- /docs/pictures/pycoQC_long.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/pycoQC_long.png -------------------------------------------------------------------------------- /docs/pictures/pycoQC_long.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/pycoQC_long.svg -------------------------------------------------------------------------------- /docs/pictures/pycoQC_short.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/pycoQC_short.png -------------------------------------------------------------------------------- /docs/pictures/pycoQC_short.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/pycoQC_short.svg -------------------------------------------------------------------------------- /docs/pictures/qual_over_time.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/qual_over_time.gif -------------------------------------------------------------------------------- /docs/pictures/reads_len_1D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/reads_len_1D.gif -------------------------------------------------------------------------------- /docs/pictures/reads_qual_1D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/reads_qual_1D.gif -------------------------------------------------------------------------------- /docs/pictures/reads_qual_len_2D.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/reads_qual_len_2D.gif -------------------------------------------------------------------------------- /docs/pictures/summary.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pictures/summary.gif -------------------------------------------------------------------------------- /docs/pycoQC/API_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/API_usage.ipynb -------------------------------------------------------------------------------- /docs/pycoQC/CLI_usage.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/CLI_usage.ipynb -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-1.2.1_basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-1.2.1_basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-1.2.3_basecall-1D-RNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-1.2.3_basecall-1D-RNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-1.7.0_basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-1.7.0_basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-2.1.10_basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-2.1.10_basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-2.1.10_basecall-1D-RNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-2.1.10_basecall-1D-RNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Albacore-2.3.1_basecall-1D-RNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Albacore-2.3.1_basecall-1D-RNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-2.1.3_basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-2.1.3_basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-2.1.3_basecall-1D-RNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-2.1.3_basecall-1D-RNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-2.1.3_basecall-1D_DNA_barcoding_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-2.1.3_basecall-1D_DNA_barcoding_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-2.2.4-basecall-1D-DNA_sequencing_summary+barcode.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/Guppy-basecall-1D-DNA_sequencing_summary.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/Guppy-basecall-1D-DNA_sequencing_summary.txt.gz -------------------------------------------------------------------------------- /docs/pycoQC/data/pycoQC_config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/data/pycoQC_config.json -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore-1.2.1_basecall-1D-DNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore-1.2.1_basecall-1D-DNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA_API.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA_API.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA_API.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore-1.7.0_basecall-1D-DNA_API.json -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore-2.1.10_basecall-1D-DNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore-2.1.10_basecall-1D-DNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Albacore_all_RNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Albacore_all_RNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Guppy-2.1.3_basecall-1D_DNA_barcode.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Guppy-2.1.3_basecall-1D_DNA_barcode.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Guppy-2.1.3_basecall-1D_RNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Guppy-2.1.3_basecall-1D_RNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Guppy-2.1.3_basecall-1D_RNA.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Guppy-2.1.3_basecall-1D_RNA.json -------------------------------------------------------------------------------- /docs/pycoQC/results/Guppy-2.3_basecall-1D_alignment-DNA.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Guppy-2.3_basecall-1D_alignment-DNA.html -------------------------------------------------------------------------------- /docs/pycoQC/results/Guppy-2.3_basecall-1D_alignment-DNA.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results/Guppy-2.3_basecall-1D_alignment-DNA.json -------------------------------------------------------------------------------- /docs/pycoQC/results2/Albacore-1.7.0_basecall-1D-DNA_API.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results2/Albacore-1.7.0_basecall-1D-DNA_API.html -------------------------------------------------------------------------------- /docs/pycoQC/results3/Albacore-1.7.0_basecall-1D-DNA_API.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/results3/Albacore-1.7.0_basecall-1D-DNA_API.json -------------------------------------------------------------------------------- /docs/pycoQC/usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/docs/pycoQC/usage.md -------------------------------------------------------------------------------- /meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/meta.yaml -------------------------------------------------------------------------------- /mkdocs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/mkdocs.yml -------------------------------------------------------------------------------- /paper/codemeta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/codemeta.json -------------------------------------------------------------------------------- /paper/paper.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/paper.bib -------------------------------------------------------------------------------- /paper/paper.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/paper.md -------------------------------------------------------------------------------- /paper/pictures/channels_activity.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/pictures/channels_activity.png -------------------------------------------------------------------------------- /paper/pictures/output_over_time.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/pictures/output_over_time.png -------------------------------------------------------------------------------- /paper/pictures/reads_qual_len_2D_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/pictures/reads_qual_len_2D_example.png -------------------------------------------------------------------------------- /paper/pictures/summary.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/paper/pictures/summary.png -------------------------------------------------------------------------------- /pycoQC/Barcode_split.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/Barcode_split.py -------------------------------------------------------------------------------- /pycoQC/Fast5_to_seq_summary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/Fast5_to_seq_summary.py -------------------------------------------------------------------------------- /pycoQC/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/__init__.py -------------------------------------------------------------------------------- /pycoQC/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/__main__.py -------------------------------------------------------------------------------- /pycoQC/common.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/common.py -------------------------------------------------------------------------------- /pycoQC/pycoQC.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/pycoQC.py -------------------------------------------------------------------------------- /pycoQC/pycoQC_parse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/pycoQC_parse.py -------------------------------------------------------------------------------- /pycoQC/pycoQC_plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/pycoQC_plot.py -------------------------------------------------------------------------------- /pycoQC/pycoQC_report.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/pycoQC_report.py -------------------------------------------------------------------------------- /pycoQC/templates/pycoQC_config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/templates/pycoQC_config.json -------------------------------------------------------------------------------- /pycoQC/templates/spectre.html.j2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/pycoQC/templates/spectre.html.j2 -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/setup.py -------------------------------------------------------------------------------- /versipy.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/versipy.yaml -------------------------------------------------------------------------------- /versipy_history.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a-slide/pycoQC/HEAD/versipy_history.txt --------------------------------------------------------------------------------