├── README.md ├── js ├── jsphylosvg-min.js ├── jsphylosvg.js ├── raphael-min.js └── readme.txt ├── py ├── data │ ├── benchmarks.md │ ├── dnds_formulae.PNG │ ├── matlab_benchmark_sliding.png │ ├── obp_profile_idea.png │ ├── observed_changes_dict.p │ ├── potential_changes_dict.p │ └── webapp_demo_dnds-and-domains.PNG └── scripts │ ├── __init__.py │ ├── align.py │ ├── align.pyc │ ├── changes.py │ ├── changes.pyc │ ├── dnds.py │ ├── dnds.pyc │ ├── sliding.py │ └── start_server.py ├── vb-genes.css └── vb-genes.html /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/README.md -------------------------------------------------------------------------------- /js/jsphylosvg-min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/js/jsphylosvg-min.js -------------------------------------------------------------------------------- /js/jsphylosvg.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/js/jsphylosvg.js -------------------------------------------------------------------------------- /js/raphael-min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/js/raphael-min.js -------------------------------------------------------------------------------- /js/readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/js/readme.txt -------------------------------------------------------------------------------- /py/data/benchmarks.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/benchmarks.md -------------------------------------------------------------------------------- /py/data/dnds_formulae.PNG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/dnds_formulae.PNG -------------------------------------------------------------------------------- /py/data/matlab_benchmark_sliding.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/matlab_benchmark_sliding.png -------------------------------------------------------------------------------- /py/data/obp_profile_idea.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/obp_profile_idea.png -------------------------------------------------------------------------------- /py/data/observed_changes_dict.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/observed_changes_dict.p -------------------------------------------------------------------------------- /py/data/potential_changes_dict.p: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/potential_changes_dict.p -------------------------------------------------------------------------------- /py/data/webapp_demo_dnds-and-domains.PNG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/data/webapp_demo_dnds-and-domains.PNG -------------------------------------------------------------------------------- /py/scripts/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /py/scripts/align.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/align.py -------------------------------------------------------------------------------- /py/scripts/align.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/align.pyc -------------------------------------------------------------------------------- /py/scripts/changes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/changes.py -------------------------------------------------------------------------------- /py/scripts/changes.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/changes.pyc -------------------------------------------------------------------------------- /py/scripts/dnds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/dnds.py -------------------------------------------------------------------------------- /py/scripts/dnds.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/dnds.pyc -------------------------------------------------------------------------------- /py/scripts/sliding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/sliding.py -------------------------------------------------------------------------------- /py/scripts/start_server.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/py/scripts/start_server.py -------------------------------------------------------------------------------- /vb-genes.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/vb-genes.css -------------------------------------------------------------------------------- /vb-genes.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/a1ultima/hpcleap_dnds/HEAD/vb-genes.html --------------------------------------------------------------------------------