├── CMakeLists.txt ├── LICENSE ├── cmake_scripts ├── Config.cmake.in ├── ConfigVersion.cmake.in ├── LibEpipolarConsistencyConfig.cmake ├── LibEpipolarConsistencyConfigVersion.cmake ├── LibGeometryCalibrationConfig.cmake ├── LibGeometryCalibrationConfigVersion.cmake ├── LibProjectiveGeometryConfig.cmake ├── LibProjectiveGeometryConfigVersion.cmake ├── LibRayCastBackprojectConfig.cmake ├── LibRayCastBackprojectConfigVersion.cmake ├── LibSimpleConfig.cmake ├── LibSimpleConfigVersion.cmake ├── LibUtilsCudaConfig.cmake ├── LibUtilsCudaConfigVersion.cmake ├── LibUtilsGLConfig.cmake ├── LibUtilsGLConfigVersion.cmake ├── LibUtilsQtConfig.cmake ├── LibUtilsQtConfigVersion.cmake ├── add_package.cmake ├── findAndTestCUDA.cmake ├── has_cuda_gpu.cpp └── qt5_win32_copy_dlls.cmake ├── code ├── HeaderOnly │ ├── LibOpterix │ │ ├── Opterix.hxx │ │ ├── ParameterGui.hxx │ │ ├── ParameterModel.hxx │ │ └── WrapNLOpt.hxx │ ├── NRRD │ │ ├── BaseTypes.hxx │ │ ├── GetSetCmdLine.hxx │ │ ├── GetSetMinimal.hxx │ │ ├── StringConversion.hxx │ │ ├── StringType.hxx │ │ ├── StringUtil.hxx │ │ ├── nrrd.hxx │ │ ├── nrrd_connected_components.hxx │ │ ├── nrrd_frst.hxx │ │ ├── nrrd_image.hxx │ │ ├── nrrd_image_stack.hxx │ │ ├── nrrd_image_view.hxx │ │ ├── nrrd_itk.hxx │ │ ├── nrrd_local_crorrelation.hxx │ │ ├── nrrd_lowpass.hxx │ │ ├── nrrd_metaio.hxx │ │ ├── nrrd_morphology.hxx │ │ └── nrrd_transform.hxx │ └── Utils │ │ ├── ITKUtils.hxx │ │ ├── ProgressInterface.hxx │ │ ├── Projtable.hxx │ │ ├── TimerWin32.hxx │ │ └── UglyXML.hxx ├── LibEpipolarConsistency │ ├── CMakeLists.txt │ ├── EpipolarConsistency.cpp │ ├── EpipolarConsistency.h │ ├── EpipolarConsistencyCommon.hxx │ ├── EpipolarConsistencyDirect.cpp │ ├── EpipolarConsistencyDirect.cu │ ├── EpipolarConsistencyDirect.h │ ├── EpipolarConsistencyRadonIntermediate.cpp │ ├── EpipolarConsistencyRadonIntermediate.cu │ ├── EpipolarConsistencyRadonIntermediate.h │ ├── EpipolarConsistencyRadonIntermediateCPU.hxx │ ├── Gui │ │ ├── ComputeRadonIntermediate.hxx │ │ ├── DisplayGeometry.hxx │ │ ├── FDCTMotionCorrection.hxx │ │ ├── InputDataDirect.cpp │ │ ├── InputDataDirect.h │ │ ├── InputDataRadonIntermediate.cpp │ │ ├── InputDataRadonIntermediate.h │ │ ├── PreProccess.cpp │ │ ├── PreProccess.h │ │ ├── Registration.cpp │ │ ├── Registration.h │ │ ├── SingleImageMotion.h │ │ ├── SingleImageMotion.hxx │ │ ├── Visualization.cpp │ │ └── Visualization.h │ ├── RadonIntermediate.cpp │ ├── RadonIntermediate.cu │ ├── RadonIntermediate.h │ ├── Rectification.cu │ └── RectifiedFBCC.h ├── LibGeometryCalibration │ ├── BeadDetection.cpp │ ├── BeadDetection.h │ ├── BeadPhantomGui.hxx │ ├── CMakeLists.txt │ ├── EstimateProjectionMatrix.cpp │ ├── EstimateProjectionMatrix.h │ ├── GeometryCalibration.cpp │ ├── GeometryCalibration.h │ ├── PhantomPDS2.cpp │ ├── PhantomPDS2.h │ └── main_pds2.cpp ├── LibProjectiveGeometry │ ├── CMakeLists.txt │ ├── CameraOpenGL.hxx │ ├── EigenToStr.hxx │ ├── EstimateProjectionMatrix.cpp │ ├── EstimateProjectionMatrix.h │ ├── GeometryVisualization.hxx │ ├── LibOpterix │ │ ├── Opterix.hxx │ │ ├── ParameterGui.hxx │ │ ├── ParameterModel.hxx │ │ └── WrapNLOpt.hxx │ ├── Models │ │ ├── ModelCameraKRt.hxx │ │ ├── ModelCameraSimilarity2D3D.hxx │ │ ├── ModelFDCTCalibrationCorrection.hxx │ │ ├── ModelHomography2D.hxx │ │ ├── ModelHomography3D.hxx │ │ ├── ModelSimilarity2D.hxx │ │ ├── ModelSimilarity3D.hxx │ │ └── ModelTrajectoryIEC61217.hxx │ ├── ProjectionMatrix.cpp │ ├── ProjectionMatrix.h │ ├── ProjectiveGeometry.hxx │ ├── SingularValueDecomposition.cpp │ ├── SingularValueDecomposition.h │ ├── SourceDetectorGeometry.cpp │ └── SourceDetectorGeometry.h ├── LibRayCastBackproject │ ├── CMakeLists.txt │ ├── Reconstruction.cpp │ ├── Reconstruction.cu │ ├── Reconstruction.h │ ├── VolumeRendering.cpp │ ├── VolumeRendering.cu │ ├── VolumeRendering.h │ ├── VolumeRenderingGui.cpp │ ├── VolumeRenderingGui.h │ ├── VoxelData.cpp │ ├── VoxelData.cu │ ├── VoxelData.h │ ├── ray_box_intersection.hxx │ ├── vr_cuda.hxx │ ├── vr_ray_geom_setup.cu │ ├── vr_raycast_debug.cu │ ├── vr_raycast_drr.cu │ ├── vr_raycast_ea_1Dtf.cu │ ├── vr_raycast_iso.cu │ └── vr_raycast_mip.cu ├── LibSimple │ ├── BufferUtils.h │ ├── CMakeLists.txt │ ├── GL │ │ ├── glad.c │ │ ├── glad.h │ │ └── khrplatform.h │ ├── SimpleEmptySpaceSkipping.cpp │ ├── SimpleEmptySpaceSkipping.h │ ├── SimpleGL.cpp │ ├── SimpleGL.h │ ├── SimpleMHD.cpp │ ├── SimpleMHD.h │ ├── SimpleOptimizer.cpp │ ├── SimpleOptimizer.h │ ├── SimpleQTGL.cpp │ ├── SimpleQTGL.h │ ├── SimpleRayCastPass.cpp │ ├── SimpleRayCastPass.h │ ├── SimpleVR.cpp │ └── SimpleVR.h ├── LibUtilsCuda │ ├── CMakeLists.txt │ ├── CudaAlgorithms.cpp │ ├── CudaAlgorithms.h │ ├── CudaBindlessTexture.cpp │ ├── CudaBindlessTexture.cu │ ├── CudaBindlessTexture.h │ ├── CudaConvolution.cu │ ├── CudaMemory.cpp │ ├── CudaMemory.h │ ├── CudaTextureArray.hxx │ ├── TestCudaUtils.cpp │ ├── TestCudaUtils.cu │ ├── UtilsCuda.hxx │ ├── culaut │ │ ├── culaut.hxx │ │ ├── xgeinv.hxx │ │ ├── xgemm.hxx │ │ ├── xgemv.hxx │ │ ├── xprojectionmatrix.hxx │ │ └── xprojectivegeometry.hxx │ └── cutil_math.h └── LibUtilsQt │ ├── CMakeLists.txt │ ├── EventFilters.cpp │ ├── EventFilters.h │ ├── Figure.hxx │ ├── FigureWindow.cpp │ ├── FigureWindow.h │ ├── GraphicsItemConvexMesh.hxx │ ├── GraphicsItems.hxx │ ├── Plot.hxx │ ├── ProjectionParameters.hxx │ ├── QCameraView.cpp │ ├── QCameraView.h │ ├── QCustomPlot.cpp │ ├── QCustomPlot.h │ ├── QGLPlot3D.cpp │ ├── QGLPlot3D.h │ └── nrrdqt.hxx ├── config ├── VisualizeECC.ini ├── example_data │ ├── proj000.nrrd │ └── proj040.nrrd └── resources │ ├── arrow_ne.svg │ ├── move.svg │ ├── rotate.svg │ └── select_rect.svg ├── examples.gitignore ├── matlab ├── ecc_demo.m ├── ecc_demo │ ├── ecc_computeK01.m │ ├── ecc_compute_consistency.m │ ├── ecc_compute_dtr.m │ ├── ecc_sample_dtr.m │ ├── ecc_sample_dtr_debug.m │ └── line_to_angle_distance.m ├── ecc_load_data.m ├── ecc_plot_uv.m ├── pluecker │ ├── join.m │ ├── join3.m │ ├── meet.m │ ├── pluecker_closest_point_to_origin.m │ ├── pluecker_direction.m │ ├── pluecker_distance_to_origin.m │ ├── pluecker_join.m │ ├── pluecker_matrix.m │ ├── pluecker_matrix3.m │ ├── pluecker_matrix_dual.m │ ├── pluecker_meet.m │ └── pluecker_moment.m └── utility │ ├── camera_normalize.m │ ├── ecc_show_lines.m │ ├── line_stroke.m │ └── nrrdread.m ├── readme.md └── tools ├── ComputeRadonIntermediate ├── CMakeLists.txt └── ComputeRadonIntermediate.cpp ├── ConsistencyDemo ├── CMakeLists.txt └── main.cpp ├── FDCTCalibrationCorrection ├── AlgorithmsNLoptFDCTCalibrationCorrection.hxx ├── CMakeLists.txt └── FDCTCalibrationCorrection.cpp ├── FDCTMotionCorrection ├── CMakeLists.txt ├── EpipolarConsistencyCalibration.hxx ├── ModelFDCT.hxx └── main_gradient_free.cpp ├── FluoroTracking ├── CMakeLists.txt ├── FluoroTracking.cpp ├── FluoroTracking_rectify.cpp └── compute_line_integrals.cu ├── Registration ├── CMakeLists.txt ├── Registration.cpp ├── Registration3D3D.hxx ├── RegistrationIntensityBased.cpp └── 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