├── .bumpversion.cfg ├── .gitignore ├── .travis.yml ├── GASP ├── __init__.py ├── __version__.py ├── affinities │ ├── __init__.py │ ├── accumulator.py │ └── utils.py ├── segmentation │ ├── GASP │ │ ├── __init__.py │ │ ├── core.py │ │ └── run_from_affinities.py │ ├── __init__.py │ ├── utils.py │ ├── watershed.py │ └── watershed_from_DT.py └── utils │ ├── __init__.py │ ├── graph.py │ └── various.py ├── README.md ├── conda-recipe ├── conda_build_config.yaml └── meta.yaml ├── examples ├── run_GASP_from_affinities.py └── run_GASP_from_graph.py ├── experiments └── CREMI │ └── run_GASP.py ├── setup.py └── test ├── GASP_from_affinities.py ├── __init__.py └── test_GASP_on_graph.py /.bumpversion.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/abailoni/GASP/HEAD/.bumpversion.cfg -------------------------------------------------------------------------------- /.gitignore: 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