├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── test-coverage.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── NOTES.md ├── R ├── accessor-methods.R ├── allClasses.R ├── allGenerics.R ├── get_classification.R ├── internals.R ├── query.R ├── show-method.R └── zzz.R ├── README.md ├── classyfireR.Rproj ├── codecov.yml ├── cran-comments.md ├── docs ├── 404.html ├── NOTES.html ├── articles │ ├── Getting-Started.html │ ├── Getting-Started_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ └── header-attrs-2.8 │ │ │ └── header-attrs.js │ ├── Introduction.html │ ├── Introduction_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ └── header-attrs-2.4 │ │ │ └── header-attrs.js │ ├── Introduction_to_classyfireR.html │ ├── Introduction_to_classyfireR_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── header-attrs-2.4 │ │ │ └── header-attrs.js │ │ └── header-attrs-2.8 │ │ │ └── header-attrs.js │ └── index.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── ClassyFire-class.html │ ├── Query-class.html │ ├── Rplot001.png │ ├── alternative_parents.html │ ├── chebi.html │ ├── classification.html │ ├── description.html │ ├── descriptors.html │ ├── direct_parent.html │ ├── get_classification.html │ ├── get_query.html │ ├── index.html │ ├── meta.html │ ├── open_cache.html │ ├── parse_external_desc.html │ ├── parse_json_output.html │ ├── show.html │ ├── submit_query.html │ └── unclassified.html ├── inst ├── CITATION └── classyfireR_0.3.8.pdf ├── man ├── ClassyFire-class.Rd ├── Query-class.Rd ├── alternative_parents.Rd ├── chebi.Rd ├── classification.Rd ├── description.Rd ├── descriptors.Rd ├── direct_parent.Rd ├── get_classification.Rd ├── get_query.Rd ├── meta.Rd ├── open_cache.Rd ├── parse_external_desc.Rd ├── parse_json_output.Rd ├── show.Rd ├── submit_query.Rd └── unclassified.Rd ├── tests ├── testthat.R └── testthat │ └── test-classification.R └── vignettes ├── .gitignore └── Getting-Started.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aberHRML/classyfireR/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aberHRML/classyfireR/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.github/workflows/test-coverage.yml: 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