├── .github └── workflows │ ├── conda-build.yml │ ├── conda-install.yml │ ├── install_notRootLaunch.yml │ └── python-publish.yml ├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── bin └── stringdecomposer ├── requirements.txt ├── setup.py └── stringdecomposer ├── __init__.py ├── __version__.py ├── main.py ├── models └── ont_logreg_model.txt ├── py ├── git.py └── standard_logger.py ├── src ├── edlib.cpp ├── edlib.h └── main.cpp └── test_data ├── DXZ1_star_monomers.fa ├── final_decomposition_fc89af8.tsv └── read.fa /.github/workflows/conda-build.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/.github/workflows/conda-build.yml -------------------------------------------------------------------------------- /.github/workflows/conda-install.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/.github/workflows/conda-install.yml -------------------------------------------------------------------------------- /.github/workflows/install_notRootLaunch.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/.github/workflows/install_notRootLaunch.yml -------------------------------------------------------------------------------- /.github/workflows/python-publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/.github/workflows/python-publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/README.md -------------------------------------------------------------------------------- /bin/stringdecomposer: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/bin/stringdecomposer -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/setup.py -------------------------------------------------------------------------------- /stringdecomposer/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /stringdecomposer/__version__.py: -------------------------------------------------------------------------------- 1 | __version__ = "1.1.2" 2 | -------------------------------------------------------------------------------- /stringdecomposer/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/main.py -------------------------------------------------------------------------------- /stringdecomposer/models/ont_logreg_model.txt: -------------------------------------------------------------------------------- 1 | -31.48494996 0.41784018 0.69186882 2 | -------------------------------------------------------------------------------- /stringdecomposer/py/git.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/py/git.py -------------------------------------------------------------------------------- /stringdecomposer/py/standard_logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/py/standard_logger.py -------------------------------------------------------------------------------- /stringdecomposer/src/edlib.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/src/edlib.cpp -------------------------------------------------------------------------------- /stringdecomposer/src/edlib.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/src/edlib.h -------------------------------------------------------------------------------- /stringdecomposer/src/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/src/main.cpp -------------------------------------------------------------------------------- /stringdecomposer/test_data/DXZ1_star_monomers.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/test_data/DXZ1_star_monomers.fa -------------------------------------------------------------------------------- /stringdecomposer/test_data/final_decomposition_fc89af8.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/test_data/final_decomposition_fc89af8.tsv -------------------------------------------------------------------------------- /stringdecomposer/test_data/read.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ablab/stringdecomposer/HEAD/stringdecomposer/test_data/read.fa --------------------------------------------------------------------------------