├── .travis.yml ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── getCluster.R ├── getNcomp.R ├── getSilhouette.R ├── getUpDownCluster.R ├── lmms.filter.lines.R ├── plotLong.R ├── proprotionality.R ├── remove.low.cv.R ├── silhouette.R ├── sysdata.rda ├── tuneCluster.block.spls.R ├── tuneCluster.spca.R ├── tuneCluster.spls.R ├── unscale.R ├── utils.R └── zzz.R ├── README.md ├── data-raw ├── kidneySimTimeGroup.R ├── kidneySimTimeGroup.rda ├── lmmSpline-method.R ├── lmms-test-data.R ├── lmms.test.data.rda ├── script_timeOmics.simdata.R └── timeOmics.simdata.rda ├── data └── timeOmics.simdata.rda ├── inst ├── CITATION └── extdata │ └── data_silhouette.rds ├── man ├── dmatrix.spearman.dissimilarity.Rd ├── figures │ └── method_overview.png ├── getCluster.Rd ├── getNcomp.Rd ├── getSilhouette.Rd ├── getUpDownCluster.Rd ├── get_demo_cluster.Rd ├── get_demo_silhouette.Rd ├── lmms.filter.lines.Rd ├── plotLong.Rd ├── proportionality.Rd ├── remove.low.cv.Rd ├── tuneCluster.block.spls.Rd ├── tuneCluster.spca.Rd ├── tuneCluster.spls.Rd └── unscale.Rd ├── tests ├── testthat.R └── testthat │ ├── test-getCluster.R │ ├── test-getNcomp.R │ ├── test-getSilhouette.R │ ├── test-lmms.filter.lines.R │ ├── test-plotLong.R │ ├── test-proportionality.R │ ├── test-tuneCluster.block.spls.R │ ├── test-tuneCluster.spca.R │ ├── test-tuneCluster.spls.R │ └── test-unscale.R └── vignettes ├── img └── method_overview.png ├── mybib.bib ├── vignette.R └── vignette.Rmd /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/abodein/timeOmics/HEAD/.travis.yml -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/abodein/timeOmics/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE.md: 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