├── .gitignore ├── CLAUDE.md ├── LICENSE.txt ├── README.md ├── acq ├── README.md ├── acqHedge.m ├── acqLCB.m ├── acqNegEI.m ├── acqNegEQI.m ├── acqNegPI.m ├── acqNegSqEI.m ├── acqPortfolio.m ├── acqRnd.m └── private │ ├── acqNegEIMin.m │ ├── acqNegGEI.m │ ├── acqNegPIMin.m │ └── acqThompson.m ├── bads.m ├── bads_examples.m ├── docs ├── AceMa2017_main.pdf ├── AceMa2017_supplement.pdf ├── README.txt └── bads-cartoon.png ├── gpdef ├── README.md ├── gpdefBads.m └── private │ └── gpdefStationaryNew.m ├── gpml-matlab-v3.6-2015-07-07 ├── .octaverc ├── Copyright ├── README ├── cov │ ├── covADD.m │ ├── covConst.m │ ├── covCos.m │ ├── covDiscrete.m │ ├── covEye.m │ ├── covFITC.m │ ├── covGaborard.m │ ├── covGaboriso.m │ ├── covGrid.m │ ├── covLIN.m │ ├── covLINard.m │ ├── covLINiso.m │ ├── covLINone.m │ ├── covMask.m │ ├── covMaternard.m │ ├── covMaterniso.m │ ├── covNNone.m │ ├── covNoise.m │ ├── covPERard.m │ ├── covPERiso.m │ ├── covPPard.m │ ├── covPPiso.m │ ├── covPeriodic.m │ ├── covPeriodicNoDC.m │ ├── covPoly.m │ ├── covPref.m │ ├── covProd.m │ ├── covRQard.m │ ├── covRQiso.m │ ├── covSEard.m │ ├── covSEfact.m │ ├── covSEiso.m │ ├── covSEisoU.m │ ├── covSEvlen.m │ ├── covSM.m │ ├── covScale.m │ └── covSum.m ├── covFunctions.m ├── doc │ ├── README │ ├── changelog │ ├── checkmark.png │ ├── demoClassification.m │ ├── demoGrid.m │ ├── demoRegression.m │ ├── f1.gif │ ├── f2.gif │ ├── f3.gif │ ├── f4.gif │ ├── f5.gif │ ├── f6.gif │ ├── f7.gif │ ├── f8.gif │ ├── f9.png │ ├── gpml_randn.m │ ├── index.html │ ├── manual.pdf │ ├── style.css │ ├── usageClassification.m │ ├── usageCov.m │ ├── usageLik.m │ ├── usageMean.m │ ├── usagePrior.m │ ├── usageRegression.m │ └── usageSampling.m ├── gp.m ├── inf │ ├── infEP.m │ ├── infExact.m │ ├── infFITC.m │ ├── infFITC_EP.m │ ├── infFITC_Laplace.m │ ├── infGrid.m │ ├── infGrid_Laplace.m │ ├── infKL.m │ ├── infLOO.m │ ├── infLaplace.m │ ├── infMCMC.m │ ├── infPrior.m │ └── infVB.m ├── infMethods.m ├── lik │ ├── likBeta.m │ ├── likErf.m │ ├── likExp.m │ ├── likGamma.m │ ├── likGauss.m │ ├── likGaussWarp.m │ ├── likGumbel.m │ ├── likInvGauss.m │ ├── likLaplace.m │ ├── likLogistic.m │ ├── likMix.m │ ├── likNegBinom.m │ ├── likPoisson.m │ ├── likSech2.m │ ├── likT.m │ ├── likUni.m │ └── likWeibull.m ├── likFunctions.m ├── mean │ ├── meanConst.m │ ├── meanDiscrete.m │ ├── meanGP.m │ ├── meanGPexact.m │ ├── meanLinear.m │ ├── meanMask.m │ ├── meanNN.m │ ├── meanOne.m │ ├── meanPoly.m │ ├── meanPow.m │ ├── meanPref.m │ ├── meanProd.m │ ├── meanScale.m │ ├── meanSum.m │ └── meanZero.m ├── meanFunctions.m ├── prior │ ├── priorClamped.m │ ├── priorClampedMulti.m │ ├── priorDelta.m │ ├── priorDeltaMulti.m │ ├── priorGamma.m │ ├── priorGauss.m │ ├── priorGaussMulti.m │ ├── priorInvGauss.m │ ├── priorLaplace.m │ ├── priorLaplaceMulti.m │ ├── priorLogNormal.m │ ├── priorMix.m │ ├── priorSmoothBox1.m │ ├── priorSmoothBox2.m │ ├── priorT.m │ ├── priorTMulti.m │ ├── priorTransform.m │ └── priorWeibull.m ├── priorDistributions.m ├── startup.m ├── test_sparse.m └── util │ ├── binaryEPGP.m │ ├── binaryGP.m │ ├── binaryLaplaceGP.m │ ├── brentmin.m │ ├── cov_deriv_sq_dist.m │ ├── elsympol.m │ ├── gauher.m │ ├── glm_invlink_exp.m │ ├── glm_invlink_expexp.m │ ├── glm_invlink_logistic.m │ ├── glm_invlink_logit.m │ ├── gpminimize.m │ ├── gpr.m │ ├── lbfgsb.m │ ├── lbfgsb │ ├── LICENSE │ ├── Makefile │ ├── README │ ├── array.h │ ├── arrayofmatrices.cpp │ ├── arrayofmatrices.h │ ├── blas.f │ ├── lbfgsb.cpp │ ├── linpack.f │ ├── matlabexception.cpp │ ├── matlabexception.h │ ├── matlabmatrix.cpp │ ├── matlabmatrix.h │ ├── matlabprogram.cpp │ ├── matlabprogram.h │ ├── matlabscalar.cpp │ ├── matlabscalar.h │ ├── matlabstring.cpp │ ├── matlabstring.h │ ├── program.cpp │ ├── program.h │ ├── solver_2_4.f │ ├── solver_3_0.f │ └── timer.f │ ├── lik_epquad.m │ ├── logphi.m │ ├── logsumexp2.m │ ├── make.m │ ├── minimize.m │ ├── minimize_lbfgsb.m │ ├── minimize_lbfgsb_gradfun.m │ ├── minimize_lbfgsb_objfun.m │ ├── minimize_v1.m │ ├── minimize_v2.m │ ├── rewrap.m │ ├── solve_chol.c │ ├── solve_chol.m │ ├── sq_dist.m │ └── unwrap2vec.m ├── gpml_fast ├── README.md ├── ard_ratquad_covariance_fast.m ├── covMaternard_fast.m ├── covPPERard.m ├── covPPERard_fast.m ├── covRQard_fast.m ├── covSEard_fast.m ├── exact_inference_fast.m ├── exact_inference_robust.m ├── infExact_fast.m ├── infExact_fastrobust.m ├── infPrior_fast.m ├── sq_dist_fast.m ├── test_extensions_fast.m └── test_fast.m ├── hetsphere.m ├── init ├── README.md ├── initLHS.m ├── initRand.m ├── initSobol.m └── private │ ├── i4_bit_hi1.m │ ├── i4_bit_lo0.m │ ├── i4_sobol.m │ ├── i4_sobol_generate.m │ ├── lhs.m │ └── tau_sobol.m ├── install.m ├── poll ├── README.md ├── pollGPS2N.m ├── pollMADS2N.m └── private │ ├── pollBADS2N.m │ └── pollBMADS2N.m ├── private ├── bads_output.m ├── boundscheck.m ├── checklist.m ├── covmatadapt.m ├── evalinitmesh.m ├── fixedbads.m ├── funlogger.m ├── gpupdate.m ├── runtest.m ├── scatterplot.m ├── setupoptions.m └── setupvars.m ├── rosenbrocks.m ├── scripts └── update_version.sh ├── search ├── README.md ├── private │ ├── searchSeries.m │ ├── searchWCMmix.m │ ├── searchWCMmultiscale.m │ └── searchWCMscale.m ├── searchCMA.m ├── searchCombine.m ├── searchCrossover.m ├── searchES.m ├── searchGauss.m ├── searchGrid.m ├── searchHedge.m ├── searchMax.m ├── searchMaxAcq.m ├── searchNewton.m ├── searchOptim.m └── searchWCM.m ├── utils ├── ESupdate.m ├── README.md ├── evalbool.m ├── fitnessTransform.m ├── force2grid.m ├── gpHyperOptimize.m ├── gpHyperSVGD.m ├── gpHyperSample.m ├── gpgrad.m ├── gphess.m ├── gppred.m ├── gppredcheck.m ├── gppriorrnd.m ├── gpset.m ├── gpstruct_check_old.m ├── gridunits.m ├── hessianapprox.m ├── landscapeplot.m ├── likGaussHe.m ├── maskindex.m ├── mcs_gp_optimizer.m ├── minimizebnd.m ├── mygp.m ├── origunits.m ├── periodCheck.m ├── prctile1.m ├── private │ └── fminbayes.m ├── swtest.m ├── transvars.m ├── uCheck.m ├── ucov.m ├── udist.m ├── ugdist.m ├── 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