├── .coveragerc ├── .coveragerc-html.css ├── .gitattributes ├── .github ├── dependabot.yml └── workflows │ ├── build.yml │ ├── docs.yml │ ├── merge-tests.yml │ ├── release.yml │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CITATION.cff ├── LICENSE ├── MANIFEST.in ├── README.md ├── docsrc ├── .nojekyll ├── Makefile ├── make.bat └── source │ ├── _static │ └── vbmc_animation.gif │ ├── about_us.rst │ ├── api │ ├── advanced_docs.rst │ ├── classes │ │ ├── acquisition_functions.rst │ │ ├── classes.rst │ │ ├── function_logger.rst │ │ ├── iteration_history.rst │ │ ├── options.rst │ │ ├── parameter_transformer.rst │ │ ├── priors.rst │ │ ├── timer.rst │ │ ├── variational_posterior.rst │ │ └── vbmc.rst │ ├── functions │ │ ├── active_sample.rst │ │ ├── create_vbmc_animation.rst │ │ ├── decorators.rst │ │ ├── entropy.rst │ │ ├── functions.rst │ │ ├── get_hpd.rst │ │ ├── kde_1d.rst │ │ └── whitening.rst │ └── options │ │ └── vbmc_options.rst │ ├── conf.py │ ├── css │ └── custom.css │ ├── development.rst │ ├── documentation.rst │ ├── examples.rst │ ├── index.rst │ ├── installation.rst │ └── quickstart.rst ├── examples ├── pyvbmc_example_1_basic_usage.ipynb ├── pyvbmc_example_2_inputs_outputs.ipynb ├── pyvbmc_example_3_diagnostics_and_saving.ipynb ├── pyvbmc_example_4_validation.ipynb ├── pyvbmc_example_5_prior_distributions.ipynb ├── pyvbmc_example_6_noisy_likelihoods.ipynb └── scripts │ ├── Makefile │ ├── pyvbmc_example_1_full_code.py │ ├── pyvbmc_example_2_full_code.py │ ├── pyvbmc_example_3_full_code.py │ ├── pyvbmc_example_4_full_code.py │ ├── pyvbmc_example_5_full_code.py │ └── pyvbmc_example_6_full_code.py ├── logo.svg ├── pylintrc ├── pyproject.toml ├── pyvbmc ├── __init__.py ├── __main__.py ├── acquisition_functions │ ├── README.md │ ├── __init__.py │ ├── abstract_acq_fcn.py │ ├── acq_fcn.py │ ├── acq_fcn_imiqr.py │ ├── acq_fcn_log.py │ ├── acq_fcn_noisy.py │ ├── acq_fcn_vanilla.py │ ├── acq_fcn_viqr.py │ └── utilities.py ├── decorators │ ├── README.md │ ├── __init__.py │ └── handle_0D_1D_input.py ├── entropy │ ├── README.md │ ├── __init__.py │ ├── entlb_vbmc.py │ └── entmc_vbmc.py ├── formatting │ ├── __init__.py │ └── formatting.py ├── function_logger │ ├── README.md │ ├── __init__.py │ └── function_logger.py ├── parameter_transformer │ ├── README.md │ ├── __init__.py │ └── parameter_transformer.py ├── priors │ ├── __init__.py │ ├── convert_to_prior.py │ ├── prior.py │ ├── product.py │ ├── scipy.py │ ├── smooth_box.py │ ├── spline_trapezoidal.py │ ├── tile_inputs.py │ ├── trapezoidal.py │ ├── uniform_box.py │ └── user_function.py ├── stats │ ├── README.md │ ├── __init__.py │ ├── get_hpd.py │ ├── kde_1d.py │ └── kl_div_mvn.py ├── testing │ ├── __init__.py │ ├── _check_grad.py │ ├── _compare_matlab.py │ ├── acquisition_functions │ │ ├── __init__.py │ │ ├── test_abstract_acquisition_function.py │ │ ├── test_acq_fcn.py │ │ ├── test_acq_fcn_imiqr.py │ │ ├── test_acq_fcn_log.py │ │ ├── test_acq_fcn_noisy.py │ │ ├── test_acq_fcn_vanilla.py │ │ └── test_acq_fcn_viqr.py │ ├── decorators │ │ ├── __init__.py │ │ └── test_handle_0D_1D_input_decorator.py │ ├── entropy │ │ ├── entropy-test.mat │ │ ├── test_entlb_vbmc.py │ │ └── test_entmc_vbmc.py │ ├── function_logger │ │ ├── __init__.py │ │ └── test_function_logger.py │ ├── parameter_transformer │ │ ├── __init__.py │ │ └── test_parameter_transformer.py │ ├── priors │ │ ├── __init__.py │ │ ├── test_convert_to_prior.py │ │ ├── test_priors.py │ │ ├── test_product_prior.py │ │ ├── test_scipy_prior.py │ │ ├── test_smooth_box_prior.py │ │ ├── test_spline_trapezoid_prior.py │ │ ├── test_tile_inputs.py │ │ ├── test_trapezoid_prior.py │ │ ├── test_uniform_box_prior.py │ │ └── test_user_function_prior.py │ ├── stats │ │ ├── __init__.py │ │ ├── test_get_hpd.py │ │ ├── test_kde1d.py │ │ └── test_kldiv_mvn.py │ ├── testing │ │ ├── __init__.py │ │ └── test_check_grad.py │ ├── timer │ │ ├── __init__.py │ │ └── test_timer.py │ ├── variational_posterior │ │ ├── X.txt │ │ ├── __init__.py │ │ ├── bnd_lb.txt │ │ ├── bnd_ub.txt │ │ ├── mu.txt │ │ ├── test_moments_no_orig_flag_2_MATLAB.mat │ │ ├── test_variational_posterior.py │ │ ├── test_vp_save_and_load.py │ │ ├── test_vp_save_static.pkl │ │ └── vp-test.mat │ ├── vbmc │ │ ├── X.txt │ │ ├── __init__.py │ │ ├── compare_MATLAB │ │ │ ├── activesample_proposalpdf.m │ │ │ ├── activesample_proposalpdf.mat │ │ │ ├── fess.m │ │ │ ├── fess.mat │ │ │ ├── log_isbasefun.m │ │ │ └── log_isbasefun.mat │ │ ├── dF.txt │ │ ├── dG_gp_log_joint.txt │ │ ├── hyp.txt │ │ ├── mu.txt │ │ ├── test_active_importance_sampling.py │ │ ├── test_gaussian_process_train.py │ │ ├── test_iteration_history.py │ │ ├── test_minimize_adam.py │ │ ├── test_options.py │ │ ├── test_variational_optimization.py │ │ ├── test_vbmc_active_sample.py │ │ ├── test_vbmc_determine_best_vp.py │ │ ├── test_vbmc_finalboost.py │ │ ├── test_vbmc_init.py │ │ ├── test_vbmc_loop_termination.py │ │ ├── test_vbmc_optimize.py │ │ ├── test_vbmc_save_and_load.py │ │ ├── test_vbmc_save_static.pkl │ │ └── y.txt │ └── whitening │ │ ├── test_rotoscaling.py │ │ ├── test_warp_gp_and_vp_gp_X.txt │ │ ├── test_warp_gp_and_vp_gp_hyps.txt │ │ ├── test_warp_gp_and_vp_gp_hyps_new.txt │ │ ├── test_warp_gp_and_vp_gp_y.txt │ │ ├── test_warp_gp_and_vp_vp_K.txt │ │ ├── test_warp_gp_and_vp_vp_lambda.txt │ │ ├── test_warp_gp_and_vp_vp_mu.txt │ │ ├── test_warp_gp_and_vp_vp_sigma.txt │ │ ├── test_warp_gp_and_vp_vp_w.txt │ │ ├── test_warp_input_R_mat.txt │ │ ├── test_warp_input_rands.txt │ │ ├── test_warp_input_scale.txt │ │ └── vp_initialized_MATLAB.mat ├── timer │ ├── README.md │ ├── __init__.py │ └── timer.py ├── variational_posterior │ ├── README.md │ ├── __init__.py │ └── variational_posterior.py ├── vbmc │ ├── README.md │ ├── __init__.py │ ├── active_importance_sampling.py │ ├── active_sample.py │ ├── create_vbmc_animation.py │ ├── gaussian_process_train.py │ ├── iteration_history.py │ ├── minimize_adam.py │ ├── option_configs │ │ ├── advanced_vbmc_options.ini │ │ ├── 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