├── .gitignore ├── CMakeLists.txt ├── CTestConfig.cmake ├── LICENSE ├── Loadable ├── AirwayInspector │ ├── CMakeLists.txt │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerAirwayInspectorModuleLogic.cxx │ │ └── vtkSlicerAirwayInspectorModuleLogic.h │ ├── MRML │ │ ├── CMakeLists.txt │ │ ├── vtkMRMLAirwayNode.cxx │ │ └── vtkMRMLAirwayNode.h │ ├── Resources │ │ ├── Icons │ │ │ └── AirwayInspector.png │ │ ├── UI │ │ │ └── qSlicerAirwayInspectorModuleWidget.ui │ │ └── qSlicerAirwayInspectorModule.qrc │ ├── Testing │ │ └── CMakeLists.txt │ ├── qSlicerAirwayInspectorModule.cxx │ ├── qSlicerAirwayInspectorModule.h │ ├── qSlicerAirwayInspectorModuleWidget.cxx │ └── qSlicerAirwayInspectorModuleWidget.h ├── AirwayModule │ ├── CMakeLists.txt │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerAirwayModuleLogic.cxx │ │ └── vtkSlicerAirwayModuleLogic.h │ ├── MRML │ │ ├── CMakeLists.txt │ │ ├── vtkMRMLAirwayDisplayNode.cxx │ │ ├── vtkMRMLAirwayDisplayNode.h │ │ ├── vtkMRMLAirwayNode.cxx │ │ ├── vtkMRMLAirwayNode.h │ │ ├── vtkMRMLAirwayStorageNode.cxx │ │ └── vtkMRMLAirwayStorageNode.h │ ├── Resources │ │ ├── Icons │ │ │ └── LoadableModuleTemplate.png │ │ ├── UI │ │ │ ├── qSlicerAirwayModuleFooBarWidget.ui │ │ │ └── qSlicerAirwayModuleModuleWidget.ui │ │ └── qSlicerAirwayModuleModule.qrc │ ├── Testing │ │ ├── CMakeLists.txt │ │ ├── Cxx │ │ │ └── CMakeLists.txt │ │ └── Python │ │ │ ├── CMakeLists.txt │ │ │ ├── test_airwaymodule_loadsave.py │ │ │ └── test_script.py │ ├── Widgets │ │ ├── CMakeLists.txt │ │ ├── qSlicerAirwayModuleFooBarWidget.cxx │ │ └── qSlicerAirwayModuleFooBarWidget.h │ ├── qSlicerAirwayModuleModule.cxx │ ├── qSlicerAirwayModuleModule.h │ ├── qSlicerAirwayModuleModuleWidget.cxx │ └── qSlicerAirwayModuleModuleWidget.h ├── CMakeLists.txt ├── ParticlesDisplay │ ├── CMakeLists.txt │ ├── Logic │ │ ├── CMakeLists.txt │ │ ├── vtkSlicerParticlesDisplayLogic.cxx │ │ └── vtkSlicerParticlesDisplayLogic.h │ ├── MRML │ │ ├── CMakeLists.txt │ │ ├── vtkMRMLParticlesDisplayNode.cxx │ │ ├── vtkMRMLParticlesDisplayNode.h │ │ ├── vtkMRMLParticlesNode.cxx │ │ └── vtkMRMLParticlesNode.h │ ├── Resources │ │ ├── Icons │ │ │ └── ParticlesDisplay.png │ │ ├── UI │ │ │ └── qSlicerParticlesDisplayModuleWidget.ui │ │ └── qSlicerParticlesDisplayModule.qrc │ ├── Testing │ │ ├── CMakeLists.txt │ │ └── Cxx │ │ │ └── CMakeLists.txt │ ├── Widgets │ │ └── CMakeLists.txt │ ├── qSlicerParticlesDisplayModule.cxx │ ├── qSlicerParticlesDisplayModule.h │ ├── qSlicerParticlesDisplayModuleWidget.cxx │ ├── qSlicerParticlesDisplayModuleWidget.h │ ├── qSlicerParticlesReader.cxx │ └── qSlicerParticlesReader.h └── RegionTypeDisplay │ ├── CMakeLists.txt │ ├── Logic │ ├── CMakeLists.txt │ ├── vtkSlicerRegionTypeLogic.cxx │ └── vtkSlicerRegionTypeLogic.h │ ├── MRML │ ├── CMakeLists.txt │ ├── vtkMRMLRegionTypeDisplayNode.cxx │ ├── vtkMRMLRegionTypeDisplayNode.h │ ├── vtkMRMLRegionTypeNode.cxx │ └── vtkMRMLRegionTypeNode.h │ ├── Resources │ ├── Icons │ │ └── RegionType.png │ ├── UI │ │ └── qSlicerRegionTypeModuleWidget.ui │ └── qSlicerRegionTypeModule.qrc │ ├── Testing │ ├── CMakeLists.txt │ └── Cxx │ │ └── CMakeLists.txt │ ├── Widgets │ └── CMakeLists.txt │ ├── qSlicerRegionTypeModule.cxx │ ├── qSlicerRegionTypeModule.h │ ├── qSlicerRegionTypeModuleWidget.cxx │ └── qSlicerRegionTypeModuleWidget.h ├── README.md ├── Resources ├── Docs │ ├── Slicer useful snippets.py │ └── Slicer-qt useful snippets.py ├── Screenshot1.png ├── Screenshot2.png └── SlicerCIPLogo.png ├── Scripted ├── CIP_ │ ├── CIP │ │ ├── Testing │ │ │ ├── geometryTopologyData.xml │ │ │ └── test_geometry_topology_data.py │ │ ├── __init__.py │ │ ├── logic │ │ │ ├── Attic.py │ │ │ ├── Colors.py │ │ │ ├── EventsTrigger.py │ │ │ ├── GeometryTopologyData.xsd │ │ │ ├── SlicerUtil.py │ │ │ ├── Util.py │ │ │ ├── __init__.py │ │ │ ├── file_conventions.py │ │ │ ├── geometry_topology_data.py │ │ │ ├── lung_splitter.py │ │ │ └── timer.py │ │ └── ui │ │ │ ├── AutoUpdateWidget.py │ │ │ ├── CIP_EditBox.py │ │ │ ├── CIP_EditorWidget.py │ │ │ ├── CaseReportsWidget.py │ │ │ ├── CollapsibleMultilineText.py │ │ │ ├── MIPViewerWidget.py │ │ │ ├── PdfReporter.py │ │ │ ├── PreProcessingWidget.py │ │ │ ├── Resources │ │ │ ├── Icons │ │ │ │ ├── ACIL.png │ │ │ │ ├── ACIL_Blank.png │ │ │ │ ├── Load.png │ │ │ │ ├── Reload.png │ │ │ │ ├── Save.png │ │ │ │ ├── SaveAll.png │ │ │ │ ├── WelcomeFiducialWithArrow-Original.png │ │ │ │ ├── analyze.png │ │ │ │ ├── axial.png │ │ │ │ ├── coronal.png │ │ │ │ ├── delete.png │ │ │ │ ├── export-csv.png │ │ │ │ ├── move_down.png │ │ │ │ ├── move_up.png │ │ │ │ ├── next.png │ │ │ │ ├── open_file.png │ │ │ │ ├── plus.png │ │ │ │ ├── previous.png │ │ │ │ ├── print.png │ │ │ │ ├── recycle.png │ │ │ │ ├── ruler.png │ │ │ │ ├── rulers.png │ │ │ │ ├── sagittal.png │ │ │ │ ├── scale.png │ │ │ │ ├── search.png │ │ │ │ ├── shortcut.png │ │ │ │ ├── upload.png │ │ │ │ ├── zoom_in.png │ │ │ │ └── zoom_out.png │ │ │ ├── SSH │ │ │ │ ├── WinSCP.com │ │ │ │ ├── WinSCP.exe │ │ │ │ └── WinSCP.ini │ │ │ ├── StructuresColorMap.ctbl │ │ │ ├── chest_region_colors.ctbl │ │ │ └── chest_type_colors.ctbl │ │ │ └── __init__.py │ ├── CIP_.py │ └── CMakeLists.txt ├── CIP_AVRatio │ ├── CIP_AVRatio.py │ ├── CMakeLists.txt │ ├── Resources │ │ ├── CIP_AVRatioReport.html │ │ ├── CIP_AVRatio_normalize.css │ │ ├── CIP_AVRatio_skeleton.css │ │ └── Icons │ │ │ └── CIP_AVRatio.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_Blank │ ├── CIP_Blank.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CIP_Blank.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_BodyComposition │ ├── CIP_BodyComposition.py │ ├── CIP_BodyComposition_logic │ │ ├── BodyCompositionParameters.py │ │ └── __init__.py │ ├── CMakeLists.txt │ ├── Resources │ │ ├── CIP_BodyComposition_ColorMap.ctbl │ │ └── Icons │ │ │ └── CIP_BodyComposition.png │ ├── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ │ └── CMakeLists.txt │ └── __init__.py ├── CIP_CalciumScoring │ ├── CIP_CalciumScoring.py │ ├── CMakeLists.txt │ └── Resources │ │ └── Icons │ │ └── CIP_CalciumScoring.png ├── CIP_Calibration │ ├── CIP_Calibration.py │ ├── CMakeLists.txt │ └── Resources │ │ └── Icons │ │ └── CIP_Calibration.png ├── CIP_InteractiveLobeSegmentation │ ├── CIP_InteractiveLobeSegmentation.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CIP_InteractiveLobeSegmentation.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_LesionModel │ ├── CIP_LesionModel.py │ ├── CMakeLists.txt │ ├── FeatureExtractionLib │ │ ├── FirstOrderStatistics.py │ │ ├── GeometricalMeasures.py │ │ ├── MorphologyStatistics.py │ │ ├── ParenchymalVolume.py │ │ ├── RenyiDimensions.py │ │ ├── TextureGLCM.py │ │ ├── TextureGLRL.py │ │ └── __init__.py │ ├── FeatureWidgetHelperLib │ │ ├── FeatureDescriptionLabel.py │ │ ├── FeatureExtractionLogic.py │ │ ├── FeatureWidgets.py │ │ └── __init__.py │ ├── Resources │ │ └── Icons │ │ │ └── CIP_LesionModel.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_MIPViewer │ ├── CIP_MIPViewer.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CIP_MIPViewer.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_PAARatio │ ├── CIP_PAARatio.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CIP_PAARatio.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_ParenchymaAnalysis │ ├── CIP_ParenchymaAnalysis.py │ ├── CMakeLists.txt │ ├── Resources │ │ ├── CIP_ParenchymaAnalysisReport.html │ │ ├── CIP_ParenchymaAnalysis_normalize.css │ │ ├── CIP_ParenchymaAnalysis_skeleton.css │ │ ├── Icons │ │ │ └── CIP_ParenchymaAnalysis.png │ │ └── ReportTemplate.html │ └── Testing │ │ └── CMakeLists.txt ├── CIP_ParenchymaSubtypeTraining │ ├── CIP_ParenchymaSubtypeTraining.py │ ├── CIP_ParenchymaSubtypeTrainingLogic │ │ ├── SubtypingParameters.py │ │ └── __init__.py │ ├── CMakeLists.txt │ ├── Resources │ │ ├── CIP_ILDClassification_ColorMap.ctbl │ │ └── Icons │ │ │ └── CIP_ParenchymaSubtypeTraining.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_ParenchymaSubtypeTrainingLabelling │ ├── CIP_ParenchymaSubtypeTrainingLabelling.py │ ├── CMakeLists.txt │ └── Resources │ │ ├── Icons │ │ └── CIP_ParenchymaSubtypeTrainingLabelling.png │ │ └── structures.xml ├── CIP_PointsLabelling │ ├── CIP_PointsLabelling.py │ ├── CMakeLists.txt │ └── Resources │ │ └── Icons │ │ └── CIP_PointsLabelling.png ├── CIP_RVLVRatio │ ├── CIP_RVLVRatio.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CIP_RVLVRatio.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_TracheaStentPlanning │ ├── CIP_TracheaStentPlanning.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ ├── CIP_TracheaStentPlanning.png │ │ │ └── TracheaModel.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CIP_TracheaStentPlanningOptimized │ ├── CIP_TracheaStentPlanningOptimized.py │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ ├── CIP_TracheaStentPlanningOptimized.png │ │ │ └── TracheaModel.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── CMakeLists.txt ├── Example │ ├── CMakeLists.txt │ ├── Example.png │ ├── Example.py │ ├── Resources │ │ └── Icons │ │ │ └── ScriptedLoadableModuleTemplate.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt ├── VolumeProbe │ ├── CMakeLists.txt │ ├── Resources │ │ └── Icons │ │ │ └── CompareVolumes.png │ └── VolumeProbe.py └── attic │ ├── CIP_GetImage │ ├── CIP_GetImage.py │ ├── CIP_GetImage_Resources │ │ ├── Icons │ │ │ └── ACIL_GetImage.png │ │ ├── WinSCP.com │ │ ├── WinSCP.exe │ │ └── WinSCP.ini │ └── CMakeLists.txt │ ├── EmphysemaSubtypes │ ├── CMakeLists.txt │ ├── EmphysemaSubtypes.py │ └── Testing │ │ └── CMakeLists.txt │ ├── LoadSaveDataWidget.py │ ├── LungRegistration │ ├── CMakeLists.txt │ ├── LungRegistration.py │ ├── Resources │ │ └── Icons │ │ │ └── LungRegistration.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ ├── PectoralisSegmentation │ ├── CMakeLists.txt │ ├── PectoralisSegmentation.py │ ├── Resources │ │ └── Icons │ │ │ └── PectoralisSegmentation.png │ └── Testing │ │ ├── CMakeLists.txt │ │ └── Python │ │ └── CMakeLists.txt │ └── PicasaSnap │ ├── CMakeLists.txt │ ├── PicasaSnap.py │ ├── Resources │ └── Icons │ │ ├── Picasa - 64.png │ │ ├── Plus - 48.png │ │ ├── Reload - 16.png │ │ ├── Reload - 32.png │ │ ├── Upload - 64.png │ │ ├── loading-128.gif │ │ ├── loading.gif │ │ ├── up-arrow-icon.jpg │ │ └── up-arrow-icon.png │ ├── Testing │ ├── CMakeLists.txt │ └── Python │ │ └── CMakeLists.txt │ ├── atom │ ├── __init__.py │ ├── auth.py │ ├── client.py │ ├── core.py │ ├── data.py │ ├── http.py │ ├── http_core.py │ ├── http_interface.py │ ├── mock_http.py │ ├── mock_http_core.py │ ├── mock_service.py │ ├── service.py │ ├── token_store.py │ └── url.py │ └── gdata │ ├── Crypto │ ├── Cipher │ │ ├── AES.pyd │ │ ├── ARC2.pyd │ │ ├── ARC4.pyd │ │ ├── Blowfish.pyd │ │ ├── CAST.pyd │ │ ├── DES.pyd │ │ ├── DES3.pyd │ │ ├── IDEA.pyd │ │ ├── RC5.pyd │ │ ├── XOR.pyd │ │ └── __init__.py │ ├── Hash │ │ ├── HMAC.py │ │ ├── MD2.pyd │ │ ├── MD4.pyd │ │ ├── MD5.py │ │ ├── RIPEMD.pyd │ │ ├── SHA.py │ │ ├── SHA256.pyd │ │ └── __init__.py │ ├── Protocol │ │ ├── AllOrNothing.py │ │ ├── Chaffing.py │ │ └── __init__.py │ ├── PublicKey │ │ ├── DSA.py │ │ ├── ElGamal.py │ │ ├── RSA.py │ │ ├── __init__.py │ │ ├── pubkey.py │ │ └── qNEW.py │ ├── Util │ │ ├── RFC1751.py │ │ ├── __init__.py │ │ ├── number.py │ │ ├── randpool.py │ │ └── test.py │ ├── __init__.py │ └── test.py │ ├── __init__.py │ ├── acl │ ├── __init__.py │ └── data.py │ ├── alt │ ├── __init__.py │ ├── app_engine.py │ └── appengine.py │ ├── analytics │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py │ ├── apps │ ├── __init__.py │ ├── adminsettings │ │ ├── __init__.py │ │ └── service.py │ ├── apps_property_entry.py │ ├── audit │ │ ├── __init__.py │ │ └── service.py │ ├── client.py │ ├── data.py │ ├── emailsettings │ │ ├── __init__.py │ │ ├── client.py │ │ ├── data.py │ │ └── service.py │ ├── groups │ │ ├── __init__.py │ │ ├── client.py │ │ ├── data.py │ │ └── service.py │ ├── migration │ │ ├── __init__.py │ │ └── service.py │ ├── multidomain │ │ ├── __init__.py │ │ ├── client.py │ │ └── data.py │ ├── organization │ │ ├── __init__.py │ │ ├── client.py │ │ ├── data.py │ │ └── service.py │ └── service.py │ ├── apps_property.py │ ├── auth.py │ ├── blogger │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py │ ├── books │ ├── __init__.py │ ├── data.py │ └── service.py │ ├── calendar │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py │ ├── calendar_resource │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── client.py │ ├── codesearch │ ├── __init__.py │ └── service.py │ ├── contacts │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py │ ├── contentforshopping │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── core.py │ ├── data.py │ ├── docs │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py │ ├── dublincore │ ├── __init__.py │ └── data.py │ ├── exif │ └── __init__.py │ ├── finance │ ├── __init__.py │ ├── data.py │ └── service.py │ ├── gauth.py │ ├── geo │ ├── __init__.py │ └── data.py │ ├── health │ ├── __init__.py │ └── service.py │ ├── marketplace │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── media │ ├── __init__.py │ └── data.py │ ├── notebook │ ├── __init__.py │ └── data.py │ ├── oauth │ ├── CHANGES.txt │ ├── __init__.py │ └── rsa.py │ ├── opensearch │ ├── __init__.py │ └── data.py │ ├── photos │ ├── __init__.py │ └── service.py │ ├── projecthosting │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── sample_util.py │ ├── service.py │ ├── sites │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── spreadsheet │ ├── __init__.py │ ├── service.py │ └── text_db.py │ ├── spreadsheets │ ├── __init__.py │ ├── client.py │ └── data.py │ ├── test_config.py │ ├── test_data.py │ ├── tlslite │ ├── BaseDB.py │ ├── Checker.py │ ├── FileObject.py │ ├── HandshakeSettings.py │ ├── Session.py │ ├── SessionCache.py │ ├── SharedKeyDB.py │ ├── TLSConnection.py │ ├── TLSRecordLayer.py │ ├── VerifierDB.py │ ├── X509.py │ ├── X509CertChain.py │ ├── __init__.py │ ├── api.py │ ├── constants.py │ ├── errors.py │ ├── integration │ │ ├── AsyncStateMachine.py │ │ ├── ClientHelper.py │ │ ├── HTTPTLSConnection.py │ │ ├── IMAP4_TLS.py │ │ ├── IntegrationHelper.py │ │ ├── POP3_TLS.py │ │ ├── SMTP_TLS.py │ │ ├── TLSAsyncDispatcherMixIn.py │ │ ├── TLSSocketServerMixIn.py │ │ ├── TLSTwistedProtocolWrapper.py │ │ ├── XMLRPCTransport.py │ │ └── __init__.py │ ├── mathtls.py │ ├── messages.py │ └── utils │ │ ├── AES.py │ │ ├── ASN1Parser.py │ │ ├── Cryptlib_AES.py │ │ ├── Cryptlib_RC4.py │ │ ├── Cryptlib_TripleDES.py │ │ ├── OpenSSL_AES.py │ │ ├── OpenSSL_RC4.py │ │ ├── OpenSSL_RSAKey.py │ │ ├── OpenSSL_TripleDES.py │ │ ├── PyCrypto_AES.py │ │ ├── PyCrypto_RC4.py │ │ ├── PyCrypto_RSAKey.py │ │ ├── PyCrypto_TripleDES.py │ │ ├── Python_AES.py │ │ ├── Python_RC4.py │ │ ├── Python_RSAKey.py │ │ ├── RC4.py │ │ ├── RSAKey.py │ │ ├── TripleDES.py │ │ ├── __init__.py │ │ ├── cipherfactory.py │ │ ├── codec.py │ │ ├── compat.py │ │ ├── cryptomath.py │ │ ├── dateFuncs.py │ │ ├── entropy.c │ │ ├── hmac.py │ │ ├── jython_compat.py │ │ ├── keyfactory.py │ │ ├── rijndael.py │ │ ├── win32prng.c │ │ └── xmltools.py │ ├── urlfetch.py │ ├── webmastertools │ ├── __init__.py │ ├── data.py │ └── service.py │ └── youtube │ ├── __init__.py │ ├── client.py │ ├── data.py │ └── service.py ├── SuperBuild.cmake ├── SuperBuild └── External_CIP.cmake └── Testing └── CMakeLists.txt /.gitignore: -------------------------------------------------------------------------------- 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