├── CHANGELOG.md ├── LICENSE.txt ├── MANIFEST ├── MANIFEST.in ├── PKG-INFO ├── README.md ├── mmpdb ├── mmpdblib ├── __init__.py ├── __main__.py ├── _compat.py ├── analysis_algorithms.py ├── cansmirks_table.py ├── command_support.py ├── commandline.py ├── config.py ├── create_index.sql ├── dbutils.py ├── do_analysis.py ├── do_database.py ├── do_fragment.py ├── do_help.py ├── do_index.py ├── drop_index.sql ├── environment.py ├── fileio.py ├── fragment_algorithm.py ├── fragment_io.py ├── fragment_types.py ├── index_algorithm.py ├── index_writers.py ├── peewee.py ├── playhouse │ ├── __init__.py │ ├── apsw_ext.py │ ├── db_url.py │ ├── flask_utils.py │ ├── pool.py │ └── sqlite_ext.py ├── properties_io.py ├── reporters.py ├── rgroup2smarts.py ├── schema.py ├── schema.sql ├── smarts_aliases.py └── smiles_syntax.py ├── setup.cfg ├── setup.py └── tests ├── cached.fragments ├── comma.smi ├── space.smi ├── space.smi.gz ├── support.py ├── tab.smi ├── test_analysis.py ├── test_data-preV2-2.fragments 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