├── README.md ├── misc ├── spaghetti-art-R.svg ├── spaghetti-art.svg └── tabernas-desert.jpg ├── module1 ├── filterPAF.py ├── merfePAF.py ├── spaghetti.sh └── taxonomyTable.py └── module2 ├── Figures ├── GENUS-PCoA.svg ├── GENUS-alfa-diversity-noNorm.svg ├── GENUS-alfa-diversity-rarefied.svg ├── SPECIES-PCoA.svg ├── UVresistantGenera.svg ├── UVresistantGenera_pres-abs.svg ├── grouped-UVgenera.png ├── seqsPerSample.png ├── topGenera.svg ├── topPhyla.svg └── ultimate-resistant-bacteria.svg ├── Metadata.csv ├── otu_table.csv ├── phyloseq_taxonomy.csv └── spaghetti.md /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/adlape95/Spaghetti/HEAD/README.md -------------------------------------------------------------------------------- /misc/spaghetti-art-R.svg: -------------------------------------------------------------------------------- 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