├── +KlustaKwik ├── KlustaKwik.exe ├── RunOneKKwik.m └── WriteKKwikFeatureFile.m ├── +MClust ├── +ClusterQuality │ ├── IsolationDistance.m │ └── L_Ratio.m ├── +ClusterTypes │ ├── @Cluster │ │ ├── CalculateIsolationDistance.m │ │ ├── CalculateLRatio.m │ │ ├── CalculateLRatio_and_IsolationDistance.m │ │ ├── CalculateSNR.m │ │ ├── CheckCluster.m │ │ ├── Cluster.m │ │ ├── ClusterFunc_00_ShowInfo.m │ │ ├── ClusterFunc_01_CheckCluster.m │ │ ├── ClusterFunc_ShowAutocorr.m │ │ ├── ClusterFunc_ShowAverageWaveform.m │ │ ├── ClusterFunc_ShowHistAtPeak.m │ │ ├── ClusterFunc_ShowHistISI.m │ │ └── ClusterFunc_ShowWaveformWaterfall.m │ ├── @CvxHullCluster │ │ ├── ClusterFunc_00_ShowInfo.m │ │ ├── ClusterFunc_AddLimit.m │ │ ├── ClusterFunc_DeleteAllLimits.m │ │ ├── ClusterFunc_DeleteLimit.m │ │ ├── CopyHulls.m │ │ ├── CvxHullCluster.m │ │ ├── PlotSelf.m │ │ └── SetParms.m │ ├── @DisplayableCluster │ │ ├── ClusterFunc_02_DeleteCluster.m │ │ ├── ClusterFunc_Convert.m │ │ ├── ClusterFunc_Copy.m │ │ ├── ClusterFunc_RunKKwikOnCluster.m │ │ ├── ClusterFunc_ShowCrosscorr.m │ │ ├── ClusterFunc_ShowWaveforms.m │ │ ├── DisplayableCluster.m │ │ ├── PanelSelf.m │ │ └── PlotSelf.m │ ├── @KKCluster │ │ └── KKCluster.m │ ├── @MCCluster │ │ └── MCCluster.m │ ├── @SpikelistCluster │ │ ├── ClusterFunc_AddSpikesByCvxHull.m │ │ ├── ClusterFunc_AddSpikesByGaussian.m │ │ ├── ClusterFunc_AddSpikesByPolygon.m │ │ ├── ClusterFunc_AddSpikesFromUnaccountedByCvxHull.m │ │ ├── ClusterFunc_AddSpikesFromUnaccountedByPolygon.m │ │ ├── ClusterFunc_CutOnBestProjection.m │ │ ├── ClusterFunc_DeleteAllSpikes.m │ │ ├── ClusterFunc_LimitSpikesByCvxHull.m │ │ ├── ClusterFunc_LimitSpikesByPolygon.m │ │ ├── ClusterFunc_LimitSpikesByWaveforms.m │ │ ├── ClusterFunc_MergeWith.m │ │ ├── ClusterFunc_RemoveSpikesByCvxHull.m │ │ ├── ClusterFunc_RemoveSpikesByPolygon.m │ │ ├── ClusterFunc_Remove_Doubles.m │ │ ├── ClusterFunc_SplitSpikesByCvxHull.m │ │ ├── ClusterFunc_SplitSpikesByPolygon.m │ │ └── SpikelistCluster.m │ └── @ZeroCluster │ │ ├── ClusterFunc__ToggleUnaccountedForSpikesOnly.m │ │ └── ZeroCluster.m ├── +Limits │ └── WaveformLimit.m ├── @BestProjectionCutter │ ├── BestProjectionCutter.m │ ├── CreateCutterWindow.m │ ├── Projection1.m │ ├── Projection2.m │ ├── Projection3.m │ ├── RecalculateProjection.m │ ├── RecalculateProjection0.m │ ├── RedrawAxes.m │ └── RedrawClusters.m ├── @Cutter │ ├── CreateCutterWindow.m │ ├── Cutter.m │ ├── CutterOption_00_CheckAllClusters.m │ ├── CutterOption_AllCrossCorrs.m │ ├── CutterOption_CloseAllNonEssentialFigs.m │ ├── CutterOption_CompareAverageWaveforms.m │ ├── CutterOption_RecolorClusters.m │ ├── DrawPolygonOnAxes.m │ ├── RedrawAxes.m │ └── RedrawClusters.m ├── @Feature │ └── Feature.m ├── @KKwikCutter │ ├── CreateCutterWindow.m │ ├── FindBestAxes.m │ ├── KKwikCutter.m │ └── RedrawAxes.m ├── @ManualCutter │ ├── CreateCutterWindow.m │ ├── CutterOption_CreateClustersFromTFiles.m │ ├── CutterOption_EvalOverlap.m │ ├── CutterOption_SelectAndDelete.m │ └── ManualCutter.m ├── @SpcCutter │ ├── CreateSpcCutterWindow.m │ ├── RedrawAxes.m │ ├── RedrawClusters.m │ └── SpcCutter.m ├── AutoCorr.m ├── AverageWaveform.m ├── CalculateFeatures.m ├── CrossCorr.m ├── GetData.m ├── GetSettings.m ├── HistISI.m ├── ReadHeader.m └── WriteHeader.m ├── +MClustStats ├── AutoCorr.c ├── AutoCorr.mexw64 ├── CrossCorr.c └── CrossCorr.mexw64 ├── +MClustUtils ├── BestSubplots.m ├── ListboxPair.m ├── NRadioSwitch.m ├── TwoRadioSwitch.m ├── UndoSystem.m ├── myCallerName.m └── process_varargin_class.m ├── @MClustData ├── AddCluster.m ├── ApplyConvexHullsFromFile.m ├── EraseTfiles.m ├── FillFeatures.m ├── GetFeatureNames.m ├── LoadNeuralTimes.m ├── LoadNeuralWaveforms.m ├── LoadTetrodeData.m ├── MClustData.m ├── WriteCQfiles.m ├── WriteTfiles.m └── WriteWVfiles.m ├── @MClustMainWindowClass ├── CreateMainWindow.m ├── MClustMainWindowClass.m └── Redraw.m ├── @MClustSettings ├── FindAvailableClusterTypes.m ├── MClustSettings.m ├── PlaceWindow.m └── StoreWindowPlace.m ├── Features ├── Extra_Features │ └── feature_PeakValleyDiff.m ├── daub4.c ├── daub4.mexw64 ├── feature_Energy.m ├── feature_EnergyD1.m ├── feature_Peak.m ├── feature_Peak6to11.m ├── feature_PeakIndex.m ├── feature_Time.m ├── feature_Valley.m ├── feature_WavePC1.m └── feature_WaveletCoeffs.m ├── LICENSE ├── LoadingEngines ├── LoadH5.m ├── LoadIntanSpikes.m ├── LoadSE_NeuralynxNT.m ├── LoadSEfromCSC.m ├── LoadTDT.m ├── LoadTT_Axona0.cpp ├── LoadTT_Axona50.mexw64 ├── LoadTT_NeuralynxNT.m ├── LoadTT_openephys.m ├── OpenEphysLoadingEngine.m ├── SubCalls │ ├── LoadSE_NeuralynxNT0.cpp │ ├── LoadSE_NeuralynxNT0.mexw64 │ ├── LoadTT_NeuralynxNT0.cpp │ ├── LoadTT_NeuralynxNT0.mexw32 │ ├── LoadTT_NeuralynxNT0.mexw64 │ ├── TDT2mat.m │ ├── TTI.m │ └── TTIcallback.m └── load_open_ephys_data.m ├── MClust.m ├── MClust0.m ├── MClustVersion.m ├── README.md ├── ResetMClust.m ├── RunClustBatch.m ├── Utilities ├── @ctsd │ ├── ctsd.m │ ├── data.m │ ├── mask.m │ ├── restrict.m │ └── smooth.m ├── @ts │ ├── data.m 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