├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R ├── 01_buildRankings.R ├── 02_calcAUC.R ├── 03_exploreThresholds.R ├── aux_AUCell_assignCells.R ├── aux_AUCell_plotHist.R ├── aux_AUCell_plotTSNE.R ├── aux_AUCell_run_byBlocks.R ├── aux_binarizeAUC.R ├── aux_getSetNames.R ├── aux_methods.R ├── aux_orderAUC.R ├── aux_plotEmb_rgb.R ├── aux_plotGeneCount.R ├── aux_thresholds.R ├── aux_updateAucellResults.R ├── class_aucellResults.R ├── priv_auc.assignmnetThreshold_v6.R └── priv_plots.R ├── README.md ├── inst ├── CITATION ├── doc │ └── AUCell.html └── examples │ ├── cellsTsne.RData │ ├── example_AUCell_buildRankings.R │ ├── example_AUCell_calcAUC.R │ ├── example_AUCell_exploreThresholds.R │ ├── example_AUCell_plotHist.R │ ├── example_AUCell_plotTSNE.R │ ├── example_AUCell_run.R │ ├── example_aucellResults_class.R │ ├── example_geneSet_methods.R │ ├── geneSignatures.gmt │ └── mouseBrain_cellLabels.tsv ├── man ├── AUCell_assignCells.Rd ├── AUCell_buildRankings.Rd ├── AUCell_calcAUC.Rd ├── AUCell_exploreThresholds.Rd ├── AUCell_plotHist.Rd ├── AUCell_plotTSNE.Rd ├── AUCell_run.Rd ├── GeneSet-methods.Rd ├── aucellResults-class.Rd ├── getSetNames.Rd ├── orderAUC.Rd ├── plotEmb_rgb.Rd ├── plotGeneCount.Rd ├── plotTsne_cellProps.Rd └── updateAucellResults.Rd ├── tests ├── testthat.R └── testthat │ ├── test_AUCell_buildRankings.R │ ├── test_AUCell_calcAUC.R │ ├── test_AUCell_exploreThresholds.R │ ├── test_AUCell_plot.R │ ├── test_AUCell_run.R │ ├── test_GeneSet_methods.R │ ├── test_class_aucResults.R │ └── test_plotGeneCount.R └── vignettes ├── AUCell.Rmd └── corrected.css /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aertslab/AUCell/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aertslab/AUCell/HEAD/NAMESPACE 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