├── DESCRIPTION ├── NAMESPACE ├── R ├── enhancerToGene.R ├── mapCells.R ├── readTemplate.R └── visualizeMappedData.R ├── README.md ├── data └── dm6_annot.RData ├── man ├── PlotVMFeatures.Rd ├── VM_loom.Rd ├── addClusterAnnotation.Rd ├── addExternalCluster.Rd ├── enhancerToGene.Rd ├── exportBB.Rd ├── getSearchSpace.Rd ├── getVirtualFeatureMatrix.Rd ├── intercalateCells.Rd ├── mapCells.Rd ├── plotAnnotatedVM.Rd ├── plotLinks.Rd ├── plotVMFeatures.Rd ├── pruneLinks.Rd ├── readTemplate.Rd ├── readTemplateBySection.Rd ├── readTemplateFromLoom.Rd └── selectLandmark.Rd ├── output ├── RM_ATAC.RDS ├── RM_RNA.RDS ├── VM.RDS ├── VM_ATAC_MAPPED.RDS └── VM_RNA_MAPPED.RDS └── vignettes ├── Vignette.Rmd └── Vignette.html /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aertslab/ScoMAP/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: 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