├── .github └── workflows │ └── ci.yaml ├── .gitignore ├── CHANGELOG.md ├── CREDITS ├── LICENSE ├── README.md ├── bct ├── __init__.py ├── algorithms │ ├── __init__.py │ ├── centrality.py │ ├── clustering.py │ ├── core.py │ ├── degree.py │ ├── distance.py │ ├── efficiency.py │ ├── generative.py │ ├── models.py │ ├── modularity.py │ ├── motifs.py │ ├── physical_connectivity.py │ ├── reference.py │ └── similarity.py ├── citations.py ├── due.py ├── motif34lib.mat ├── nbs.py ├── nbs_parallel.py ├── utils │ ├── __init__.py │ ├── miscellaneous_utilities.py │ ├── other.py │ └── visualization.py └── version.py ├── docs ├── Makefile ├── _build │ ├── doctrees │ │ ├── _templates │ │ │ └── function.doctree │ │ ├── bct.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ ├── modules.doctree │ │ └── stupid.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _sources │ │ ├── _templates │ │ │ └── function.txt │ │ ├── bct.txt │ │ ├── index.txt │ │ ├── modules.txt │ │ └── stupid.txt │ │ ├── _static │ │ ├── ajax-loader.gif │ │ ├── basic.css │ │ ├── comment-bright.png │ │ ├── comment-close.png │ │ ├── comment.png │ │ ├── default.css │ │ ├── doctools.js │ │ ├── down-pressed.png │ │ ├── down.png │ │ ├── file.png │ │ ├── jquery.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── sidebar.js │ │ ├── underscore.js │ │ ├── up-pressed.png │ │ ├── up.png │ │ └── websupport.js │ │ ├── _templates │ │ └── function.html │ │ ├── bct.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── modules.html │ │ ├── np-modindex.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ ├── searchindex.js │ │ └── stupid.html ├── _templates │ └── function.rst ├── bct.rst ├── conf.py ├── index.rst ├── modules.rst └── sphinxext │ └── numpy_ext │ ├── __init__.py │ ├── docscrape.py │ ├── docscrape_sphinx.py │ └── numpydoc.py ├── function_reference.html ├── requirements.txt ├── setup.py ├── test ├── __init__.py ├── basic_test.py ├── centrality_test.py ├── clustering_test.py ├── conftest.py ├── core_test.py ├── distance_test.py ├── duecredit_test.py ├── efficiency_test.py ├── failing_cases │ └── modularity_dir_example.csv ├── load_samples.py ├── mats │ ├── sample_data.mat │ ├── sample_data.npy │ ├── sample_directed.mat │ ├── sample_directed.npy │ ├── sample_directed_gc.mat │ ├── sample_directed_gc.npy │ ├── sample_group_dsi.mat │ ├── sample_group_dsi.npy │ ├── sample_group_fmri.mat │ ├── sample_group_fmri.npy │ ├── sample_group_qball.mat │ ├── sample_group_qball.npy │ ├── sample_partition.mat │ ├── sample_partition.npy │ ├── sample_pc.mat │ ├── sample_pc.npy │ ├── sample_signed.mat │ ├── sample_signed.npy │ ├── sample_signed_partition.mat │ ├── sample_zi.mat │ └── sample_zi.npy ├── modularity_derived_metrics_test.py ├── modularity_test.py ├── nbs_test.py ├── nodals_test.py ├── partition_distance_test.py ├── reference_test.py ├── simple_script.py └── very_long_test.py └── tox.ini /.github/workflows/ci.yaml: 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