├── .gitignore ├── MANIFEST.in ├── README.md ├── __init__.py ├── bin └── model2csv ├── eharmonize ├── __init__.py ├── data │ ├── ENIGMA_LUT.txt │ ├── FA_reference.csv │ ├── FA_subsample_reference.csv │ ├── __init__.py │ └── reference_meta.json ├── funcs │ ├── __init__.py │ └── utils.py └── scripts │ ├── __init__.py │ └── cli.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/.gitignore -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- 1 | __author__ = 'azhu' 2 | -------------------------------------------------------------------------------- /bin/model2csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/bin/model2csv -------------------------------------------------------------------------------- /eharmonize/__init__.py: -------------------------------------------------------------------------------- 1 | __author__ = 'azhu' 2 | 3 | -------------------------------------------------------------------------------- /eharmonize/data/ENIGMA_LUT.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/data/ENIGMA_LUT.txt -------------------------------------------------------------------------------- /eharmonize/data/FA_reference.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/data/FA_reference.csv -------------------------------------------------------------------------------- /eharmonize/data/FA_subsample_reference.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/data/FA_subsample_reference.csv -------------------------------------------------------------------------------- /eharmonize/data/__init__.py: -------------------------------------------------------------------------------- 1 | __author__ = 'azhu' 2 | -------------------------------------------------------------------------------- /eharmonize/data/reference_meta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/data/reference_meta.json -------------------------------------------------------------------------------- /eharmonize/funcs/__init__.py: -------------------------------------------------------------------------------- 1 | __author__ = 'azhu' 2 | -------------------------------------------------------------------------------- /eharmonize/funcs/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/funcs/utils.py -------------------------------------------------------------------------------- /eharmonize/scripts/__init__.py: -------------------------------------------------------------------------------- 1 | __author__ = 'azhu' 2 | -------------------------------------------------------------------------------- /eharmonize/scripts/cli.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/eharmonize/scripts/cli.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ahzhu/eharmonize/HEAD/setup.py --------------------------------------------------------------------------------