├── .gitignore ├── .gitmodules ├── 0-extract_patches ├── convert_h5_to_jpg.py └── readme.md ├── 1-sort_images ├── readme.md └── sort_hierarchy.py ├── 3-prepare-geomDataset ├── prepare_dataset.py └── readme.md ├── CONTRIBUTING.md ├── Example.ipynb ├── LICENSE ├── bash.sh ├── environment.yml ├── eval.py ├── logo.png ├── main.py ├── models ├── __init__.py ├── abmil │ ├── __init__.py │ ├── abmil.py │ ├── readme.md │ └── utils.py ├── dasmil │ ├── __init__.py │ ├── dasmil.py │ ├── model.png │ └── readme.md ├── dsmil │ ├── __init__.py │ ├── dsmil.py │ └── readme.md ├── hipt │ ├── __init__.py │ ├── hipt.py │ └── utils.py ├── maxpooling │ ├── __init__.py │ └── maxpooling.py ├── meanpooling │ ├── __init__.py │ └── meanpooling.py ├── readme.md ├── transmil │ ├── __init__.py │ └── transmil.py └── utils │ ├── __init__.py │ ├── basemodel.py │ └── modules.py ├── readme.md ├── t2 ├── __init__.py ├── cam_multi.csv ├── create_csv.py ├── extract_tree │ ├── __init__.py │ └── embedding_extract_tree.py ├── readme.md └── run_with_submitit.py └── utilsmil4wsi ├── __init__.py ├── compute_froc.py ├── datasets.py ├── evaluate_froc.py ├── experiments.py ├── losses.py ├── metrics.py ├── parser.py ├── process.py ├── qupath.py ├── seed.py ├── test.py ├── training.py └── utils2.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aimagelab/mil4wsi/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aimagelab/mil4wsi/HEAD/.gitmodules -------------------------------------------------------------------------------- /0-extract_patches/convert_h5_to_jpg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aimagelab/mil4wsi/HEAD/0-extract_patches/convert_h5_to_jpg.py 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