├── README.md ├── data_and_posterior ├── jolly_seber_model.py ├── pac_bayes_model.py ├── secom_design_matrix.npy ├── secom_features.txt ├── secom_outcome.npy └── secom_outcome.txt ├── demo ├── Jolly-Seber example.ipynb └── PAC Bayes example.ipynb ├── dhmc └── dhmc_sampler.py ├── efficiency_comparison ├── Jolly-Seber for benchmarking.ipynb └── PAC Bayes for benchmarking.ipynb ├── other_samplers ├── mcmc_diagnostic.py └── nuts_sampler.py └── test └── Compare DHMC samples to the exact target distribution.ipynb /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/aki-nishimura/discontinuous-hmc/HEAD/README.md -------------------------------------------------------------------------------- /data_and_posterior/jolly_seber_model.py: -------------------------------------------------------------------------------- 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