├── CAAYNNNNNRTAC_model_6_m6A.pkl ├── CRAANNNNNNNTGC_model_6_m6A.pkl ├── LICENSE ├── README.md ├── compare_genomes.py ├── extract_contexts.py ├── get_positions.py ├── load_mCaller_data.py ├── mCaller.py ├── make_bed.py ├── motifs_plot.png ├── plotlib.py ├── r94_model_NN_6_m6A.pkl ├── r95_twobase_model_NN_6_m6A.pkl ├── read_qual.py ├── testdata ├── mac178083_med_cornell_edu_20160922_FN_MN17623_sequencing_run_20160922_nasa_mix_98347_ch372_read1326_strand1.fast5 ├── masonread1.eventalign.diffs.6 ├── masonread1.eventalign.diffs.6.train ├── masonread1.eventalign.tsv ├── masonread1.fastq ├── masonread1.methylation.summary.bed ├── pb_ecoli_polished_assembly.fasta ├── pb_ecoli_polished_assembly.fasta.fai ├── test_positions.txt ├── test_positions_A.txt └── test_positions_m6A.txt ├── testdata_from_fast5.sh └── train_model.py /CAAYNNNNNRTAC_model_6_m6A.pkl: -------------------------------------------------------------------------------- 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