├── .github └── workflows │ └── docs.yml ├── .gitignore ├── .idea ├── .gitignore ├── Palaeoanalytics.iml ├── inspectionProfiles │ └── profiles_settings.xml ├── modules.xml └── vcs.xml ├── .python-version ├── .travis.yml ├── CITATION.cff ├── CONTRIBUTING.md ├── README.md ├── citation.zenodo.json ├── docs ├── about.md ├── assets │ └── images │ │ ├── KL3_5313_1.png │ │ ├── awbari.png │ │ ├── awbari.png_labeled.png │ │ ├── awbari.png_voronoi.png │ │ ├── drawing_style.png │ │ ├── lithic_300dpi.png │ │ ├── lithic_300dpi_annotation.png │ │ ├── lithic_300dpi_processed.png │ │ ├── pylithics_workflow.mmd │ │ ├── qesem_cave.png │ │ ├── replica_1.png │ │ ├── rub_al_khali.png │ │ ├── rub_al_khali.png_labeled.png │ │ └── rub_al_khali.png_voronoi.png ├── index.md ├── installation.md ├── reference │ └── cli-commands.md └── user-guide │ ├── basic-usage.md │ ├── glossary.md │ ├── image-requirements.md │ ├── index.md │ ├── lithic-editor.md │ ├── metadata-setup.md │ ├── outputs.md │ ├── troubleshooting.md │ └── voronoi-analysis.md ├── figures ├── drawing_style.png ├── pylithics_flowchart.jpg ├── pylithics_flowchart.png ├── pylithics_flowchart.svg ├── rub_al_khali_lithic_surfaces.png └── rub_al_khali_lithium_voranoi.png ├── license ├── mkdocs.yml ├── paper ├── LICENSE.txt ├── paper.bib ├── paper.md ├── pylithics_flowchart.jpg ├── rub_al_khali_JSON.png ├── rub_al_khali_lithic_angles.png ├── rub_al_khali_lithic_scars.png └── rub_al_khali_lithic_surfaces.png ├── pylithics ├── __init__.py ├── app.py ├── config │ └── config.yaml ├── data │ ├── images │ │ ├── KL3_5313_1.png │ │ ├── awbari.png │ │ ├── qesem_cave.png │ │ ├── replica_1.png │ │ └── rub_al_khali.png │ ├── meta_data.csv │ └── scales │ │ └── sc_001.png └── image_processing │ ├── __init__.py │ ├── config.py │ ├── image_analysis.py │ ├── importer.py │ ├── modules │ ├── __init__.py │ ├── arrow_detection.py │ ├── arrow_integration.py │ ├── contour_extraction.py │ ├── contour_metrics.py │ ├── cortex_detection.py │ ├── lateral_analysis.py │ ├── scale_calibration.py │ ├── scar_complexity.py │ ├── surface_classification.py │ ├── symmetry_analysis.py │ ├── visualization.py │ └── voronoi_analysis.py │ └── utils.py ├── pytest.ini ├── requirements.txt ├── setup.py └── tests ├── conftest.py ├── test_analysis_pipeline.py ├── test_arrow_detection.py ├── test_arrow_integration.py ├── test_batch_processing.py ├── test_cli_interface.py ├── test_config.py ├── test_contour_extraction.py ├── test_contour_metrics.py ├── test_cortex_detection.py ├── test_error_scenarios.py ├── test_full_pipeline.py ├── test_image_preprocessing.py ├── test_lateral_analysis.py ├── test_scale_calibration.py ├── test_scar_complexity.py ├── test_surface_classification.py ├── test_symmetry_analysis.py ├── test_utils.py ├── test_visualization.py └── test_voronoi_analysis.py /.github/workflows/docs.yml: -------------------------------------------------------------------------------- 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