├── .dockerignore ├── .github └── workflows │ ├── main.yml │ └── pages.yml ├── .gitignore ├── .pre-commit-config.yaml ├── Cargo.lock ├── Cargo.toml ├── Dockerfile ├── LICENSE ├── README.md ├── config ├── England │ ├── bedfordshire.txt │ ├── berkshire.txt │ ├── bristol.txt │ ├── buckinghamshire.txt │ ├── cambridgeshire.txt │ ├── cheshire.txt │ ├── cornwall.txt │ ├── cumbria.txt │ ├── derbyshire.txt │ ├── devon.txt │ ├── dorset.txt │ ├── durham.txt │ ├── east-sussex.txt │ ├── east-yorkshire-with-hull.txt │ ├── essex.txt │ ├── gloucestershire.txt │ ├── greater-london.txt │ ├── greater-manchester.txt │ ├── hampshire.txt │ ├── herefordshire.txt │ ├── hertfordshire.txt │ ├── isle-of-wight.txt │ ├── kent.txt │ ├── lancashire.txt │ ├── leicestershire.txt │ ├── lincolnshire.txt │ ├── merseyside.txt │ ├── norfolk.txt │ ├── north-yorkshire.txt │ ├── northamptonshire.txt │ ├── northumberland.txt │ ├── nottinghamshire.txt │ ├── oxfordshire.txt │ ├── rutland.txt │ ├── shropshire.txt │ ├── somerset.txt │ ├── south-yorkshire.txt │ ├── staffordshire.txt │ ├── suffolk.txt │ ├── surrey.txt │ ├── tyne-and-wear.txt │ ├── warwickshire.txt │ ├── west-midlands.txt │ ├── west-sussex.txt │ ├── west-yorkshire.txt │ ├── wiltshire.txt │ └── worcestershire.txt ├── Scotland │ ├── argyll-and-west-dunbartonshire.txt │ ├── ayrshire.txt │ ├── dumfries-and-galloway.txt │ ├── edinburgh.txt │ ├── fife.txt │ ├── forth-valley.txt │ ├── greater-glasgow.txt │ ├── highlands-and-islands.txt │ ├── lanarkshire.txt │ ├── north-east.txt │ ├── renfrewshire-and-inverclyde.txt │ ├── tayside.txt │ └── the-lothians-and-scottish-borders.txt ├── Wales │ ├── bridgend-and-neath-port-talbot.txt │ ├── cardiff-and-vale-of-glamorgan.txt │ ├── central-valleys.txt │ ├── conwy-and-denbighshire.txt │ ├── flintshire-and-wrexham.txt │ ├── gwent-valleys.txt │ ├── gwynedd.txt │ ├── isle-of-anglesey.txt │ ├── monmouthshire-and-newport.txt │ ├── powys.txt │ ├── south-west-wales.txt │ └── swansea.txt └── special │ ├── northwest_transpennine.txt │ ├── oxford_cambridge_arc.csv │ └── oxford_cambridge_arc.txt ├── data ├── generate_manifest.sh └── manifest.csv ├── docs ├── .gitattributes ├── .gitignore ├── SPC_Schema_full.png ├── _quarto.yml ├── advanced_code_walkthrough.qmd ├── advanced_developer_guide.qmd ├── advanced_performance.qmd ├── img │ ├── BMIControl.pdf │ ├── BMIControl.png │ ├── BMIDistrib.png │ ├── BMIStart.pdf │ ├── BMIStart.png │ ├── BMIdistrib.pdf │ ├── SPC_Schema.png │ ├── SPC_Schema_full.png │ ├── SPC_Schema_full_new.png │ ├── error1.png │ ├── error2.png │ ├── tracing.png │ └── venues.png ├── index.qmd ├── logo_SPC_Black.png ├── logo_SPC_White.png ├── understanding_data_schema.qmd ├── understanding_data_sources.qmd ├── understanding_introduction.qmd ├── understanding_modelling_methods.qmd ├── understanding_technical_overview.qmd ├── using_custom_areas.qmd ├── using_england_outputs.qmd ├── using_getting_started.qmd ├── using_installation.qmd ├── using_outputs.qmd ├── using_scotland_outputs.qmd ├── using_use_output.qmd ├── using_wales_outputs.qmd └── validation.qmd ├── python ├── README.md ├── demos │ └── ASG July 22 Demostration.ipynb ├── draw_venues.py ├── examples │ ├── spc_builder_example.ipynb │ ├── spc_reader_comparison.ipynb │ └── spc_reader_exploratory.ipynb ├── protobuf_to_csv.py ├── protobuf_to_json.py ├── pyproject.toml ├── synthpop_pb2.py ├── tests │ ├── test_builder.py │ ├── test_reader.py │ └── test_utils.py └── uatk_spc │ ├── __init__.py │ ├── builder.py │ ├── reader.py │ ├── scripts.py │ └── synthpop_pb2.py ├── scripts ├── check_determinism.sh ├── collect_stats.py ├── data_prep │ ├── .Rprofile │ ├── .lintr │ ├── 2020_lad_list.csv │ ├── README.md │ ├── SAVE_SPC_required_data.zip │ ├── SPC_functions.R │ ├── SPC_loadWorkspace.R │ ├── SPC_pipelineLAD.R │ ├── SPC_single_region.R │ ├── age_rescaling │ │ ├── SPC_functions_age_rescaling.R │ │ ├── SPC_loadWorkspace_age_rescaling.R │ │ ├── SPC_pipelineLAD_age_rescaling.R │ │ ├── SPC_single_region_age_rescaling.R │ │ ├── age_rescaling.R │ │ └── run_pipelineLAD_age_rescaling.sh │ ├── digests │ │ ├── data_dl.txt │ │ └── uk_data_service.txt │ ├── legacy │ │ ├── BMIStuff.R │ │ ├── EventsStuff.R │ │ ├── IncomeStuff.R │ │ ├── createBMI.R │ │ ├── createIncome.R │ │ ├── createMobilityFile.R │ │ ├── createWorkplaceFile.R │ │ ├── fullPipeline.R │ │ └── preparation.R │ ├── raw_prep │ │ ├── prep_dl.py │ │ ├── prep_dl.sh │ │ └── requirements.txt │ ├── raw_to_prepared.R │ ├── raw_to_prepared_Environment.R │ ├── raw_to_prepared_Income.R │ ├── raw_to_prepared_LSOA-DZ_list_for_nomis.txt │ ├── raw_to_prepared_MSOA-IZ_list_for_nomis.txt │ ├── raw_to_prepared_Workplaces.R │ ├── raw_to_prepared_nomisAPIKey.txt │ ├── renv.lock │ ├── renv │ │ ├── .gitignore │ │ ├── activate.R │ │ └── settings.json │ ├── run_pipelineLAD.sh │ ├── run_toAzure_complete.sh │ ├── toAzure_complete.R │ └── upload_toAzure.sh ├── generate_config_files.py ├── reference │ └── diariesMatchingLogic.R ├── run_pipeline_everywhere.sh ├── select_msoas.py └── upload_data.sh ├── src ├── init │ ├── commuting.rs │ ├── diaries.rs │ ├── lockdown.rs │ ├── mod.rs │ ├── msoas.rs │ ├── population.rs │ ├── quant.rs │ └── raw_data.rs ├── lib.rs ├── main.rs ├── protobuf.rs ├── synthpop.proto ├── tracing_span_tree.rs ├── utilities.rs └── writers.rs ├── synthpop.proto ├── tests └── determinism.rs └── web ├── .rgignore ├── App.svelte ├── README.md ├── assets ├── Big_Image.png ├── Mobile_img.png ├── SPC_WebExplorerLogo.png └── logo.png ├── components ├── About.svelte ├── DateInput.svelte ├── Diaries.svelte ├── FileLoader.svelte ├── Flows.svelte ├── Layer.svelte ├── Layout.svelte ├── Map.svelte ├── Modal.svelte ├── MsoaBoundaries.svelte ├── Plots.svelte ├── Sidebar.svelte ├── Tabs.svelte └── Venues.svelte ├── data.js ├── index.html ├── package-lock.json ├── package.json ├── pb └── synthpop_pb.js └── vite.config.js /.dockerignore: 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