├── .gitignore ├── LICENSE ├── README.md ├── docs ├── TFF-format.md ├── parse-tff.md ├── qsubsec-format.md ├── qsubsec.md └── update-template.md ├── examples ├── example-1.qsubsec ├── example-2.qsubsec └── gencode-ref │ ├── README.md │ ├── gencode-ref-tokens.png │ ├── gencode-ref.qsubsec │ └── gencode-ref.tff ├── qsubsec ├── __init__.py ├── scripts.py ├── sectionFormatter.py ├── sectionSubmitter.py ├── sections.py ├── templates.py ├── tokens.py └── version.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | archive 3 | __pycache__ 4 | qsubsec.egg-info 5 | build 6 | dist 7 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/README.md -------------------------------------------------------------------------------- /docs/TFF-format.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/docs/TFF-format.md -------------------------------------------------------------------------------- /docs/parse-tff.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/docs/parse-tff.md -------------------------------------------------------------------------------- /docs/qsubsec-format.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/docs/qsubsec-format.md -------------------------------------------------------------------------------- /docs/qsubsec.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/docs/qsubsec.md -------------------------------------------------------------------------------- /docs/update-template.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/docs/update-template.md -------------------------------------------------------------------------------- /examples/example-1.qsubsec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/example-1.qsubsec -------------------------------------------------------------------------------- /examples/example-2.qsubsec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/example-2.qsubsec -------------------------------------------------------------------------------- /examples/gencode-ref/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/gencode-ref/README.md -------------------------------------------------------------------------------- /examples/gencode-ref/gencode-ref-tokens.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/gencode-ref/gencode-ref-tokens.png -------------------------------------------------------------------------------- /examples/gencode-ref/gencode-ref.qsubsec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/gencode-ref/gencode-ref.qsubsec -------------------------------------------------------------------------------- /examples/gencode-ref/gencode-ref.tff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/examples/gencode-ref/gencode-ref.tff -------------------------------------------------------------------------------- /qsubsec/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /qsubsec/scripts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/scripts.py -------------------------------------------------------------------------------- /qsubsec/sectionFormatter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/sectionFormatter.py -------------------------------------------------------------------------------- /qsubsec/sectionSubmitter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/sectionSubmitter.py -------------------------------------------------------------------------------- /qsubsec/sections.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/sections.py -------------------------------------------------------------------------------- /qsubsec/templates.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/templates.py -------------------------------------------------------------------------------- /qsubsec/tokens.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/tokens.py -------------------------------------------------------------------------------- /qsubsec/version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/qsubsec/version.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alastair-droop/qsubsec/HEAD/setup.py --------------------------------------------------------------------------------