├── .coveragerc ├── .dockerignore ├── .gitignore ├── .readthedocs.yml ├── .travis.yml ├── AUTHORS ├── CHANGELOG.md ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── Dockerfile ├── HACKING.md ├── INSTALL ├── LICENSE.txt ├── Makefile ├── README.rst ├── ROADMAP.md ├── appveyor.yml ├── config.mk ├── contrib └── papis.desktop ├── doc ├── Makefile ├── source │ ├── api.rst │ ├── commands.rst │ ├── commands │ │ ├── add.rst │ │ ├── addto.rst │ │ ├── bibtex.rst │ │ ├── browse.rst │ │ ├── commands.rst │ │ ├── config.rst │ │ ├── default.rst │ │ ├── edit.rst │ │ ├── explore.rst │ │ ├── export.rst │ │ ├── git.rst │ │ ├── list.rst │ │ ├── mv.rst │ │ ├── open.rst │ │ ├── rename.rst │ │ ├── rm.rst │ │ ├── run.rst │ │ └── update.rst │ ├── conf.py │ ├── configuration.rst │ ├── database_structure.rst │ ├── default-settings.rst │ ├── faq.rst │ ├── git.rst │ ├── gui.rst │ ├── importing.rst │ ├── index.rst │ ├── info_file.rst │ ├── install.rst │ ├── library_structure.rst │ ├── plugins.rst │ ├── quick_start.rst │ ├── scihub.rst │ ├── scripting.rst │ └── shell_completion.rst └── sphinx.mk ├── examples └── scripts │ ├── LTWA.json │ ├── papis-abbrev │ ├── papis-check │ ├── papis-ga │ ├── papis-mail │ └── papis-tags ├── papis ├── __init__.py ├── api.py ├── arxiv.py ├── base.py ├── bibtex.py ├── cli.py ├── commands │ ├── __init__.py │ ├── add.py │ ├── addto.py │ ├── bibtex.py │ ├── browse.py │ ├── config.py │ ├── default.py │ ├── edit.py │ ├── explore.py │ ├── export.py │ ├── external.py │ ├── git.py │ ├── list.py │ ├── mv.py │ ├── open.py │ ├── rename.py │ ├── rm.py │ ├── run.py │ └── update.py ├── config.py ├── crossref.py ├── database │ ├── __init__.py │ ├── base.py │ ├── cache.py │ └── whoosh.py ├── dissemin.py ├── docmatcher.py ├── document.py ├── downloaders │ ├── __init__.py │ ├── acs.py │ ├── annualreviews.py │ ├── aps.py │ ├── base.py │ ├── fallback.py │ ├── frontiersin.py │ ├── get.py │ ├── hal.py │ ├── ieee.py │ ├── iopscience.py │ ├── sciencedirect.py │ ├── scitationaip.py │ ├── springer.py │ ├── tandfonline.py │ ├── thesesfr.py │ └── worldscientific.py ├── exceptions.py ├── git.py ├── importer.py ├── isbn.py ├── isbnplus.py ├── json.py ├── library.py ├── pick.py ├── plugin.py ├── pubmed.py ├── strings.py ├── tui │ ├── __init__.py │ ├── app.py │ └── widgets │ │ ├── __init__.py │ │ ├── command_line_prompt.py │ │ ├── diff.py │ │ └── list.py ├── utils.py └── yaml.py ├── scripts └── shell_completion │ ├── Makefile │ ├── build │ └── bash │ │ └── papis │ ├── click │ ├── papis.sh │ └── zsh │ │ └── _papis │ └── tools │ ├── bash.sh │ └── lib.sh ├── setup.cfg ├── setup.py ├── tests ├── __init__.py ├── cli.py ├── commands │ ├── data │ │ ├── ken.yaml │ │ └── lib1.bib │ ├── test_add.py │ ├── test_addto.py │ ├── test_browse.py │ ├── test_check.py │ ├── test_config.py │ ├── test_default.py │ ├── test_edit.py │ ├── test_explore.py │ ├── test_export.py │ ├── test_git.py │ ├── test_list.py │ ├── test_mv.py │ ├── test_open.py │ ├── test_rename.py │ ├── test_rm.py │ ├── test_run.py │ └── test_update.py ├── data │ └── licl.yaml ├── database │ ├── __init__.py │ ├── test_base.py │ ├── test_papis.py │ └── test_whoosh.py ├── downloaders │ ├── __init__.py │ ├── resources │ │ ├── acs_1.html │ │ ├── acs_1_out.json │ │ ├── acs_2.html │ │ ├── acs_2_out.json │ │ ├── annualreviews_1.html │ │ ├── annualreviews_1_out.json │ │ ├── fallback_1_out.json │ │ ├── fallback_2.html │ │ ├── fallback_2_out.json │ │ ├── hal_1.html │ │ ├── hal_1_out.json │ │ ├── iopscience_1.html │ │ ├── iopscience_1_out.json │ │ ├── iopscience_2.html │ │ ├── iopscience_2_out.json │ │ ├── prl_1.html │ │ ├── prl_1_out.json │ │ ├── sciencedirect_1.html │ │ ├── sciencedirect_1_authors.json │ │ ├── sciencedirect_1_authors_out.json │ │ ├── sciencedirect_1_out.json │ │ ├── sciencedirect_2.html │ │ ├── sciencedirect_2_out.json │ │ ├── springer_1.html │ │ ├── springer_1_out.json │ │ ├── springer_2.html │ │ ├── springer_2_out.json │ │ ├── tandfonline_1.html │ │ ├── tandfonline_1_out.json │ │ ├── tandfonline_2.html │ │ ├── tandfonline_2_out.json │ │ └── wiley_1.html │ ├── test_acs.py │ ├── test_annualreviews.py │ ├── test_aps.py │ ├── test_arxiv.py │ ├── test_fallback.py │ ├── test_hal.py │ ├── test_iopscience.py │ ├── test_sciencedirect.py │ ├── test_springer.py │ ├── test_tandfonline.py │ └── test_utils.py ├── resources │ ├── bibtex │ │ ├── 1.bib │ │ ├── 1_out.json │ │ ├── 2.bib │ │ ├── 2_out.json │ │ ├── 3.bib │ │ └── 3_out.json │ ├── commands │ │ └── update │ │ │ ├── positron.json │ │ │ ├── russell.yaml │ │ │ └── wannier.bib │ ├── config_1.ini │ ├── crossref │ │ ├── test1.json │ │ ├── test1_out.json │ │ ├── test_2.json │ │ ├── test_2_out.json │ │ ├── test_conference.json │ │ └── test_conference_out.json │ ├── document │ │ └── info.yaml │ ├── example_document.txt │ └── minimal.ini ├── test_arxiv.py ├── test_bibtex.py ├── test_config.py ├── test_crossref.py ├── test_deps.py ├── test_docmatcher.py ├── test_document.py ├── test_importer.py ├── test_isbn.py ├── test_utils.py └── 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