├── .gitignore ├── ChangeLog.md ├── FAQ.md ├── License.txt ├── ReadMe.md ├── example ├── hap │ ├── LCT.hap │ └── demo.hap └── vcf │ ├── case.sample │ └── cont.sample ├── hap_format.md ├── help.txt ├── isafe ├── .ipynb_checkpoints │ ├── __init__-checkpoint.py │ ├── __main__-checkpoint.py │ ├── bcftools-checkpoint.py │ ├── isafe-checkpoint.py │ ├── isafeclass-checkpoint.py │ ├── safeclass-checkpoint.py │ └── utils-checkpoint.py ├── __init__.py ├── __main__.py ├── bcftools.py ├── isafe.py ├── isafeclass.py ├── safeclass.py └── utils.py ├── requirements.txt ├── sample_ID_format.md ├── setup.cfg ├── setup.py └── tests ├── .ipynb_checkpoints └── test_isafe-checkpoint.py ├── __init__.py └── test_isafe.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alek0991/iSAFE/HEAD/.gitignore -------------------------------------------------------------------------------- /ChangeLog.md: 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