├── .gitignore ├── .pre-commit-config.yaml ├── .travis.yml ├── CHANGELOG ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── TODO.rst ├── bin ├── example_descriptors.py ├── example_modlamp.py ├── example_modlamp.rst └── mic_conversion.py ├── docs ├── Makefile ├── conf.py ├── examplescript.rst ├── google-analytics.html ├── index.rst ├── layout.html ├── license.rst ├── modlamp.rst ├── readme.rst ├── static │ ├── 2D_scatter.png │ ├── 2D_scatter_2.png │ ├── 3D_scatter.png │ ├── AA_dist.png │ ├── cd1.png │ ├── cd2.png │ ├── cd3.png │ ├── custom.css │ ├── fileheader.png │ ├── helixplot_legend.png │ ├── modlab.png │ ├── modlamp.ico │ ├── pde.png │ ├── profileplot.png │ ├── summary.png │ ├── uH_APD3.png │ ├── uH_Eisenberg.png │ ├── validation_curve.png │ ├── violins.png │ ├── wheel1.png │ ├── wheel2.png │ ├── wheel3.png │ └── wheel4.png ├── theme.conf └── todo.rst ├── modlamp ├── __init__.py ├── analysis.py ├── core.py ├── data │ ├── ACP_CancPPD_vs_Random.csv │ ├── ACP_CancPPD_vs_TM.csv │ ├── AMPvsTMset.csv │ ├── AMPvsUniProt.csv │ ├── custom.csv │ ├── db_config.json │ └── test.fasta ├── database.py ├── datasets.py ├── descriptors.py ├── ml.py ├── plot.py ├── sequences.py ├── version.py └── wetlab.py ├── requirements.txt ├── setup.py └── tests ├── __init__.py ├── files ├── lib.csv ├── lib.fasta ├── plots │ └── testplot.png ├── saved.fasta ├── test.fasta └── wetlab │ ├── PDF │ ├── Peptide1_T.pdf │ ├── Peptide1_T_M.pdf │ └── Peptide2_W.pdf │ ├── Peptide1_T.csv │ └── Peptide2_W.csv ├── test_amphiarc.py ├── test_analysis.py ├── test_centrosymmetric.py ├── test_core.py ├── test_database.py ├── test_datasets.py ├── test_global_descriptor.py ├── test_helicesACP.py ├── test_helix.py ├── test_hepahel.py ├── test_kinked.py ├── test_ml.py ├── test_ngrams.py ├── test_oblique.py ├── test_peptide_descriptor.py ├── test_plot.py ├── test_random_seq.py └── test_wetlab.py /.gitignore: -------------------------------------------------------------------------------- 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