├── .gitignore ├── LICENSE ├── README.md ├── settings.gradle └── src └── main └── java ├── FASTAParser.java ├── FASTAWriter.java ├── Gene.java ├── MultiVCFAnalyzer.java ├── Read.java ├── SNP.java └── SNPeffSNP.java /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/README.md -------------------------------------------------------------------------------- /settings.gradle: -------------------------------------------------------------------------------- 1 | rootProject.name = 'MultiVCFAnalyzer' -------------------------------------------------------------------------------- /src/main/java/FASTAParser.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/FASTAParser.java -------------------------------------------------------------------------------- /src/main/java/FASTAWriter.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/FASTAWriter.java -------------------------------------------------------------------------------- /src/main/java/Gene.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/Gene.java -------------------------------------------------------------------------------- /src/main/java/MultiVCFAnalyzer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/MultiVCFAnalyzer.java -------------------------------------------------------------------------------- /src/main/java/Read.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/Read.java -------------------------------------------------------------------------------- /src/main/java/SNP.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/SNP.java -------------------------------------------------------------------------------- /src/main/java/SNPeffSNP.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/alexherbig/MultiVCFAnalyzer/HEAD/src/main/java/SNPeffSNP.java --------------------------------------------------------------------------------