├── LICENSE ├── README.md ├── SAMReg ├── __init__.py ├── cores │ ├── SAMAffine.py │ ├── SAMCoarse.py │ ├── SAMConvexAdam.py │ ├── SAMInsOpt.py │ ├── functionals.py │ ├── layers.py │ ├── losses.py │ └── voxelmorph.py ├── datasets │ └── BaseDataset.py └── tools │ ├── Config.py │ ├── __init__.py │ ├── interfaces.py │ └── utils │ ├── __init__.py │ ├── general.py │ ├── med.py │ └── visualize.py ├── data └── readme.md ├── demos ├── configs │ ├── _base_ │ │ ├── datasets │ │ │ └── deeplesion_sam.py │ │ └── default_runtime.py │ └── sam │ │ ├── sam_r18_i3d_fpn_1x_deeplesion.py │ │ ├── sam_r18_i3d_fpn_1x_multisets.py │ │ └── sam_r18_i3d_fpn_1x_multisets_sgd_T_0.5_half_test.py ├── data_preprocess_example.py ├── eval_NetInsO_abdomen.py ├── reg_sam_affine.py ├── reg_sam_coarse.py └── splits.json ├── my_bash.sh ├── requirements.txt ├── scripts ├── train.py └── train_config │ ├── same_w_corr_masked_lncc_sVF_supervised.py │ ├── same_w_corr_ncc_sVF_unsupervised.py │ ├── train_config_abdomen.py │ └── 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